View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13262_high_20 (Length: 382)

Name: NF13262_high_20
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13262_high_20
NF13262_high_20
[»] chr1 (1 HSPs)
chr1 (10-382)||(6992642-6993014)


Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 10 - 382
Target Start/End: Original strand, 6992642 - 6993014
Alignment:
Q  10 catcaccttgcacatcaccttccagataattactggacaaatcaatcgttttaatcttgttcataaaaccattcacaggtccataaaacaaattgtttga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6992642 catcaccttgcacatcaccttccagataattactggacaaatcaatcgttttaatcttgttcataaaaccattcacaggtccataaaacaaattgtttga 6992741  T
Q  110 tagattgaatatgccacctgagctaacatttaaaccagacaattttggtagtggatcagtgagactgttgtctgatacatcaaatattagcaacttaggc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6992742 tagattgaatatgccacctgagctaacatttaaaccagacaattttggtagtggatcagtgagactgttttctgatacatcaaatattagcaacttaggc 6992841  T
Q  210 attgacaacaaactacccggcaacggcccagaaagagaattcatactaagatcgagttcaaccaactttgaaagattacctagctgagagggaagcggag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6992842 attgacaacaaactacccggcaacggcccagaaagagaattcatactaagatcgagttcaaccaactttgaaagattacctagctgagagggaagcgaag 6992941  T
Q  310 aagtgaaagaattgttagaaaggttcaaattttgaagatttgaaagggtacctagttcaggtggaatagagcc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6992942 aagtgaaagaattgttagaaaggttcaaattttgaagatttgaaagggtacctagttcaggtggaatagagcc 6993014  T

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