View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_high_22 (Length: 369)
Name: NF13262_high_22
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 346
Target Start/End: Original strand, 40692190 - 40692522
Alignment:
| Q |
14 |
gaagagtgaaattggatcaattttttagtagaaattgtttggtggaaaatgaattgaatcaaacggagtaagatcaagtgaacttggttcagtagttatt |
113 |
Q |
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| T |
40692190 |
gaagagtgaaattggatcaattttttagtagaaattgtttggtggaaaatgaattgaatcaaacggagtaagatcaactgaacttggttcagtagttatt |
40692289 |
T |
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| Q |
114 |
ttcattagaggtaaatggatcagttcctagcattgagaaaatagatcactgacttttttcttttaaaattgaagtatataaatttctgtgacagatttaa |
213 |
Q |
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| T |
40692290 |
ttcattagaggtaaatggatcagttcctagcattcagaaaatagatcactgacttttttcttttaaaattgaagtatataaatttctgtgacagatttaa |
40692389 |
T |
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| Q |
214 |
ttggtgtcatgtggtccacttgattcatgaagaatactacactctacacaatacacttgacatgaaacaatgtctttaaacgaatataatcaaagaatac |
313 |
Q |
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| T |
40692390 |
ttggtgtcatgtggtccacttgattcatgaagaatactacactctacacaatacacttgacatgaaacaatgtctttaaacgaatataatcaaagaatac |
40692489 |
T |
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| Q |
314 |
tgttattctagtgacatcatactatactagtag |
346 |
Q |
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| T |
40692490 |
tgttattctagtgacatcatactatactagtag |
40692522 |
T |
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