View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_high_28 (Length: 331)
Name: NF13262_high_28
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 314
Target Start/End: Complemental strand, 34627440 - 34627140
Alignment:
| Q |
14 |
tactcaccgcaagtataagaatgaagccaaaaattaggattggaataaaggaaacatatgaagatatattaaatcaaaatagtggtaatcattatatatg |
113 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34627440 |
tactcaccacaagtacaagaatgaagccaaaaattaggattggaataaaggaaacatatgaagatatattaaatcaaaatagtggtaatcattatatatg |
34627341 |
T |
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| Q |
114 |
aagttgaaacaaagaacagataacttactaagtgcacaaaatctctcgctgcaattgcaagaatatctgcacaggacaccacagtaggacactttttctc |
213 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34627340 |
aagttgaaacaaagaacaggtaacttactaagtgcacaaaatctcttgctgcaattgcaagaatatctgcacaggacaccacagtaggacactttttctc |
34627241 |
T |
|
| Q |
214 |
caccacttcttttgccttccttatagtctcaaaaccctccatcctcaaatctttattatcctctgcatctttctctgccaactccttgctccctggcttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34627240 |
caccacttcttttgccttccttatagtctcaaaaccctccatcctcaaatctttattatcctctgcatctttctctgccaactccttgctccctggcttt |
34627141 |
T |
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| Q |
314 |
g |
314 |
Q |
| |
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| |
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| T |
34627140 |
g |
34627140 |
T |
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