View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_high_3 (Length: 699)
Name: NF13262_high_3
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 17 - 447
Target Start/End: Complemental strand, 53660674 - 53660244
Alignment:
| Q |
17 |
acatatagttgacattatgagttgtatgaacttatccaattgtgtatatattttaaaaaacttttcaggttgttaaggttgctgattttggtgtagccag |
116 |
Q |
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| T |
53660674 |
acatatagttgacattatgagttgtatgaacttatccaattgtgtatatattttaaaatccttttcaggttgttaaggttgctgattttggtgtagccag |
53660575 |
T |
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| Q |
117 |
agtgcgcaatcgttctggtataatgactgcagagaccggaacatatcggtggatggctccagaggtctgtgtatatatataagcattgccatagggttgg |
216 |
Q |
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| T |
53660574 |
agtgcgcaatcgttctggtataatgactgcagagaccggaacatatcggtggatggctccagaggtctgtgtatatatataagcattgccatagggttgg |
53660475 |
T |
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| Q |
217 |
ttacttctaaatttttaaatgtataacctacaggtttggatgaggaagtttaagacgaacctagacaagttggaatgagaatgacggcttttatgctgaa |
316 |
Q |
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| T |
53660474 |
ttacttctaaattttaaaatgtataacctacaggtttggatgaggaagtttaagacgaacctagactagttggaatgagaatgacggcttttatgctgaa |
53660375 |
T |
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| Q |
317 |
aattgaataattggaactgaatatctattaaagctaacatgaattttagnnnnnnncgttgcttatacgctttgcaaatagataataacaattttgttcc |
416 |
Q |
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| T |
53660374 |
aattgaataattggaactgaatatctattaaagctaacatgaattttagtttttttcgttgcttatacgctttgcaaatagataataacaattttgttcc |
53660275 |
T |
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| Q |
417 |
ctattttataaacctcaccatctctcttgtt |
447 |
Q |
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| T |
53660274 |
ctattttataaacctcaccctctctcttgtt |
53660244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 444 - 692
Target Start/End: Complemental strand, 53660208 - 53659959
Alignment:
| Q |
444 |
tgttcgtcctaacgaaataagtatctcactgannnnnnngtgacataggtcacattgaccaaatcgcgtaaacttttgtgtcttgttctttcctcttttt |
543 |
Q |
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| T |
53660208 |
tgttcgtcctaacgaaataagtatctcactgatttctttgtgacgtaggtcacattgaccaaatcgcgtaaacttttgtgtcttgttctttcctcttttt |
53660109 |
T |
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| Q |
544 |
cctttgatcttccaacttgtgtgtggtttattcttgtctttg-tcaaaacaattacaactaatttgtgatctctcttacatatgaaaggttattgagcat |
642 |
Q |
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| T |
53660108 |
cctttgatcttccgacttgtgtgtggtttattcttgtctttggtcaaaacaattacaactaatttgtgatctctcttacatatgaaaggttattgagcat |
53660009 |
T |
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| Q |
643 |
aaaccttatgatcacaaagctgatgtctttagctttgcaattgttctctg |
692 |
Q |
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| T |
53660008 |
aaaccatatgatcacaaagctgatgtctttagctttgcaattgttctctg |
53659959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 8449722 - 8449624
Alignment:
| Q |
94 |
gttgctgattttggtgtagccagagtgcgcaatcgttctggtataatgactgcagagaccggaacatatcggtggatggctccagaggtctgtgtatat |
192 |
Q |
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|||||||||||||||||||||||| ||| |||| || ||||| |||||||| || || ||||| || |||||||||||||||||||| ||||||||| |
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| T |
8449722 |
gttgctgattttggtgtagccagattgcaaaatcaatccggtatcatgactgcggaaactggaacgtaccggtggatggctccagaggtatgtgtatat |
8449624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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