View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_high_31 (Length: 300)
Name: NF13262_high_31
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_high_31 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 287
Target Start/End: Original strand, 11454122 - 11454407
Alignment:
| Q |
2 |
gtttctaataactttctatctatttttcataaatgtcatgtttctcaacattgcgtaatacaaaaatatgcttttgtgtcgatcaagtaaattttttgat |
101 |
Q |
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| T |
11454122 |
gtttctcataactttttctctatttttcatgaatgtcatgtttctcaatattgcgtaatacaaaaatatgattttgagtcgatcaagtaaattttttgat |
11454221 |
T |
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| Q |
102 |
ctgacgaacaaagattgaggtgtcaacgaaataataaaataattaggatttgatgtactgttttatttcaactttctcatttgtaagattattcaataat |
201 |
Q |
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| T |
11454222 |
ctgacgaacaaagattgaggtgccaacgaaataataaaataattaggatttgatgcactgttttatttcaactttctcatttgtaagattattcaataat |
11454321 |
T |
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| Q |
202 |
atcaatacaaagtttttcataactttctctctatttttcatggatgccatgtttatcaacattgcatgatactaaaatatgctttt |
287 |
Q |
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| T |
11454322 |
atcaatacaaagtttttcataactttctctctatttttcatggatgccatgtttatcaatattgcatgatactaaaatatgctttt |
11454407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 11454340 - 11454471
Alignment:
| Q |
9 |
ataactttctatctatttttcataaatgtcatgtttctcaacattgcgtaatacaaaaatatgcttttgtgtcgatcaagtaaattttttgatctgacga |
108 |
Q |
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| T |
11454340 |
ataactttctctctatttttcatggatgccatgtttatcaatattgcatgatactaaaatatgcttttgagtagatcaagtacattttttgatctgacta |
11454439 |
T |
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| Q |
109 |
acaaagattgaggtgtcaacgaaataataaaa |
140 |
Q |
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| T |
11454440 |
acaaagattgtggtgtcaacgaaataataaaa |
11454471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 164 - 287
Target Start/End: Original strand, 11454075 - 11454196
Alignment:
| Q |
164 |
ttatttcaactttctcatttgtaagattattcaataatatcaatacaaagtttttcataactttctctctatttttcatggatgccatgtttatcaacat |
263 |
Q |
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| T |
11454075 |
ttatttcaattttctcatttgtaagattattcaataat--caatacaaagtttctcataactttttctctatttttcatgaatgtcatgtttctcaatat |
11454172 |
T |
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| Q |
264 |
tgcatgatactaaaatatgctttt |
287 |
Q |
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| T |
11454173 |
tgcgtaatacaaaaatatgatttt |
11454196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 11449264 - 11449352
Alignment:
| Q |
52 |
ttgcgtaatacaaaaatatgcttttgtgtcgatcaagtaaattttttgatctgacgaacaaagattgaggtgtcaacgaaataataaaa |
140 |
Q |
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| T |
11449264 |
ttgcgaaatacaacaatatgattttgaattgatcaaacaaattttaagatctgaccaacaaagattgaggtgtcaacgagataataaaa |
11449352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 34326156 - 34326212
Alignment:
| Q |
150 |
tttgatgtactgttttatttcaactttctcatttgtaagattattcaataatatcaa |
206 |
Q |
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| T |
34326156 |
tttgatatactcttttacttcaactttctaatttgtaagattgttcaatattatcaa |
34326212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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