View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_high_33 (Length: 292)
Name: NF13262_high_33
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 35035636 - 35035920
Alignment:
| Q |
10 |
catcatccatttttacctactatagctggttagtttgatgcccttgagttttggtt------tattaaacattcaatcatttagagtggcaaagaatttt |
103 |
Q |
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| T |
35035636 |
catcatccatttttacctactatagctggttagtttgatgccctagagttttaatgagtatgtattaaacattcaatcatttagagtggcaaagaatttt |
35035735 |
T |
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| Q |
104 |
tcatattagaataaaagtatatatgcgtcnnnnnnn--ttaggatataatccctctcaaaaatatgcaattgtaatataaccatcccg-----------t |
190 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35035736 |
tcatattagaataaaagtatatatgcgtcaaaaaaaaattaggatataatccctctcaaaaatatgcaattgtaatataaccatcccgtgtaaaacccgt |
35035835 |
T |
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| Q |
191 |
gtccagatattggttatactattagttatgcactgagtctgacttaaagaataaaagaacaagaccaagaataagtagtttttct |
275 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035836 |
gtccagttattggttatactattagttatgcactgagtctgacttaaagaataaaagaacaagaccaagaataagtagtttttct |
35035920 |
T |
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