View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13262_high_34 (Length: 287)

Name: NF13262_high_34
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13262_high_34
NF13262_high_34
[»] chr3 (1 HSPs)
chr3 (1-287)||(40375581-40375867)


Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 40375867 - 40375581
Alignment:
Q  1 ttgaagctaccaccctatgctacaacaacaatagttaggaggaggaaagaagaggagtgacacgcttcaaccataacttttcggttaaaagcatcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40375867 ttgaagctaccaccctatgctacaacaacaatagttaggaggagggaagaagaggagggacacgcttcaaccataacttttcggttaaaagcatcattaa 40375768  T
Q  101 acatgtgacttttttaacaagattttgctataacaatgtttcatttcatgctttttcaatttgaccattggacccacttttcatgtaataataaaatgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40375767 acatgtgacttttttaacaagattttgctataacaatgtttcatttcatgctttttcaatttgaccattggacccacttttcatgtaataataaaatgtt 40375668  T
Q  201 aacattattattagttgacgaatgtaagaaataagaaatatatccccattcattgatttttcttacttgtttaattatctatatttt 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40375667 aacattattattagttgacgaatgtaagaaataagaaatatatccccattcattgatttttcttacttgtttaattatctatatttt 40375581  T

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