View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_high_36 (Length: 279)
Name: NF13262_high_36
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_high_36 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 53351680 - 53351951
Alignment:
| Q |
8 |
agaagaaatacaaattaatgacatgatcaccaaaataatcaacaaggtataacacaagtggtaaaccctaaattgcacaatgtgtgatctaacgaatatg |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53351680 |
agaacaaatacaaattaatgacatgatcaccaaaataatcaacaaggtataacacaagtggtaaaccctaaattgcacaatgtgtgatctaacgaatatg |
53351779 |
T |
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| Q |
108 |
gttgcaattgtagaaggatagataaatatttcaaataaaacaaaaagaaaagaagtaaagcatgaagataaaacctcttgagccagcttagaccatttga |
207 |
Q |
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| T |
53351780 |
gttgcaattgtagaaggatagataaatatttcaaataaaacaaaaagaaaagaagtaaagcatgaagataaaacctcttgagccagcttagaccatttga |
53351879 |
T |
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| Q |
208 |
attcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
279 |
Q |
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| T |
53351880 |
attcaccaaagttgttaaagaaccgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
53351951 |
T |
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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 279
Target Start/End: Original strand, 26033391 - 26033548
Alignment:
| Q |
124 |
gatagataaatatttcaaataaaacaaaaagaaaagaagtaaagcatgaagataaaa---cctcttgagccagcttagaccatttgaattcaccaaagtt |
220 |
Q |
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| T |
26033391 |
gatagatcaatatttcaaattaaagaaagt-aaaagaagtaaagcatgaataagaaattacctcctcagccagcttagaccatttgaattcaccatactt |
26033489 |
T |
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| Q |
221 |
gttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
279 |
Q |
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| T |
26033490 |
tttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacat |
26033548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 38180807 - 38180708
Alignment:
| Q |
180 |
acctcttgagccagcttagaccatttgaattcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
279 |
Q |
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| T |
38180807 |
acctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacat |
38180708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 38190324 - 38190423
Alignment:
| Q |
180 |
acctcttgagccagcttagaccatttgaattcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
279 |
Q |
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| T |
38190324 |
acctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacat |
38190423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 38208031 - 38207932
Alignment:
| Q |
180 |
acctcttgagccagcttagaccatttgaattcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
279 |
Q |
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| T |
38208031 |
acctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacat |
38207932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 38217549 - 38217648
Alignment:
| Q |
180 |
acctcttgagccagcttagaccatttgaattcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
279 |
Q |
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| T |
38217549 |
acctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacat |
38217648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 38456167 - 38456068
Alignment:
| Q |
180 |
acctcttgagccagcttagaccatttgaattcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
279 |
Q |
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| T |
38456167 |
acctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacat |
38456068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 26033338 - 26033391
Alignment:
| Q |
14 |
aatacaaattaatgacatgatcaccaaaataatcaacaaggtataacacaagtg |
67 |
Q |
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| T |
26033338 |
aatacaaattaatgacatgatcaacaaaataatcaacaaggtaaaacacaagtg |
26033391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 38447258 - 38447182
Alignment:
| Q |
195 |
ttagaccatttgaattcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggcccctt |
271 |
Q |
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| T |
38447258 |
ttagaccatttgaatccaccaaacttcttacgtaactgaaagactttattttcttcttctttactaaatggaccctt |
38447182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 217
Target Start/End: Complemental strand, 38342621 - 38342533
Alignment:
| Q |
136 |
tttcaaataaaacaaaaagaaaag----aagtaaagcatgaagataaa---acctcttgagccagcttagaccatttgaattcaccaaa |
217 |
Q |
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| T |
38342621 |
tttcaaataaaagaaaaagaaaaggaagaagtaaagcatgaacaaaaatatacctcgagagccatcttagaccatttgaactcaccaaa |
38342533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 217
Target Start/End: Complemental strand, 38446814 - 38446726
Alignment:
| Q |
136 |
tttcaaataaaacaaaaagaaaag----aagtaaagcatgaagataaa---acctcttgagccagcttagaccatttgaattcaccaaa |
217 |
Q |
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|||||||||||| ||||||||||| |||||||||||||| | ||| ||||| |||||| ||||||||||||||| |||||||| |
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| T |
38446814 |
tttcaaataaaagaaaaagaaaaggaagaagtaaagcatgaacaaaaatatacctcgagagccatcttagaccatttgaactcaccaaa |
38446726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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