View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_high_45 (Length: 234)
Name: NF13262_high_45
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 1035751 - 1035952
Alignment:
| Q |
12 |
tccaagaatattgcattggaaaattcaacttcaactctatctaacgacatcactggtaatgacaaagagaaatttcttgacggacttttagtttcaggat |
111 |
Q |
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| T |
1035751 |
tccaaaaatattgcattggaaaattcaacttcaa---tatctaacgacatcactggtaatgacaaagagaaatttcttgatggacttttagtttcaggat |
1035847 |
T |
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| Q |
112 |
ttgatgaatcatcatgcataagcaggtcacaatctcatcatttcta-cacaaaccttctccatatttgttatctaaacttcaaaagtatgaagaaaatca |
210 |
Q |
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| T |
1035848 |
ttgatgaatcatcatgcataagcaggtcacaatc---tcatttctaccacaaaccttctccatatttgttatctaaacttggaaagtatgaagaaaatca |
1035944 |
T |
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| Q |
211 |
tagaaaat |
218 |
Q |
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|||||||| |
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| T |
1035945 |
tagaaaat |
1035952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 6939093 - 6938956
Alignment:
| Q |
12 |
tccaagaatattgcattggaaaattcaacttcaactctatctaacgacatcactggtaatgacaaagagaaatttcttgacggacttttagtttcaggat |
111 |
Q |
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||||| |||||| ||||| ||||| ||||||||||| | | || || ||||||| | |||| ||||||||||| |||||||||||||||||||| |||| |
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| T |
6939093 |
tccaaaaatatttcattgacaaatttaacttcaactccaccaaaagagatcactgatgatgagaaagagaaattgcttgacggacttttagtttctggat |
6938994 |
T |
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| Q |
112 |
ttgatgaatcatcatgcataagcaggtcacaatctcat |
149 |
Q |
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| T |
6938993 |
ttgatgaagcatcatgtgtaagcaggttacaatctcat |
6938956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 6938934 - 6938877
Alignment:
| Q |
158 |
cacaaaccttctccatatttgttatctaaacttcaaaagtatgaagaaaatcatagaa |
215 |
Q |
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| T |
6938934 |
cacaaaccttctccatatttgatatctaaactaagaaaatatgaagaacttcatagaa |
6938877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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