View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_high_5 (Length: 649)
Name: NF13262_high_5
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 252 - 633
Target Start/End: Complemental strand, 22595088 - 22594710
Alignment:
| Q |
252 |
tctcgttgcaaaacattatgaaagaaatctttatggctgattaacttataaaagtgcttttaaaaatataaatttcactttcatatatttagttgctttt |
351 |
Q |
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| T |
22595088 |
tctcgttgcaaaacattatgaaagaaatcttcatggctgattgacttataaaagtgcttttaaaaatataaatt-cactttcatatatttagttgctttt |
22594990 |
T |
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| Q |
352 |
agtannnnnnnnncttcttgttttttgaaattgattttaactttaaggattatatttacctccaaacacgataatttatcttggtgtatgttttgttgcg |
451 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22594989 |
agtatttttttt--ttcttgttttttgaaattgattttaactttaaggattatatttacctccaaacccgataatttatcttggtgtatgttttgttgcg |
22594892 |
T |
|
| Q |
452 |
cgcccgcatttccaaacacatgtccgcccttgcttttgttgcgatttcttaaaagctacaaaaccaaacttctacctagacgcagcaagcttgttgtgat |
551 |
Q |
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| T |
22594891 |
cgcccgcatttccaaacacatgtccgcccttgcttttgttgcgatttcttaaaagctacaaaaccaaacttctacctagacgcagcaagcttgttgtgat |
22594792 |
T |
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| Q |
552 |
tttggcaaaacatgaggttcaaccaattgtttgtcgcaatttcataaaagctacaaaaccaaacttcaacttggatgtgaaa |
633 |
Q |
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| T |
22594791 |
tttggcaaaacatgaggttcaaccaattgttcgtcgcaatttcataaaagctacaaaaccaaacttcaacttggatgtgaaa |
22594710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 22595519 - 22595262
Alignment:
| Q |
1 |
agctacatgagtgaaaaagtgtaggtatagtaa----atgtgagttagaactcttaaaccggatggatgaaaaattagacgttgagtataaagtgagatg |
96 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22595519 |
agctacatgagtgaaaaagtgtaggtatagtaagtaaatgtgagttagaactcttaaaccggatggatgaaaaattagactttgagtataaagtgagatg |
22595420 |
T |
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| Q |
97 |
acttatacaccaaatatatgtttggtttgaattattttcatcgactccacatgactaaggtcttttgatgtcaaaatgcgaagtgattgattgttgtttc |
196 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22595419 |
acttatacaccaaatatatgttcggtttgaattattttcatcgattccacatgactaaggtcttttgatgtcaaaatgcgaagtgattgattgttgtttc |
22595320 |
T |
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| Q |
197 |
tgcgttaatatagttatttgccgtgattttacaaatgtgtatccaagcacatacgtct |
254 |
Q |
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|| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
22595319 |
tgagttaatatagttatttgccgtgattttgcaaacgtgtatccaagcacatacgtct |
22595262 |
T |
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