View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_low_10 (Length: 446)
Name: NF13262_low_10
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 235 - 429
Target Start/End: Original strand, 44419518 - 44419711
Alignment:
| Q |
235 |
gcagcttattacaaatgcagaactagaagagtcacctctgtatgttccattacatgattttgaaggtttgagggagattaatttatggtcataaataaac |
334 |
Q |
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| T |
44419518 |
gcagcttattacaaatgcagaactagaagagtcacctctgtatgttccattacatgattttgaaggtttgagggagattaatttatggtcataaataaac |
44419617 |
T |
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| Q |
335 |
attatttgagtgaaggatatttaccttaagaaagtagacaaaatgatttgagtttattgttgcagacattgaagaaaaagatgtgaaattcatag |
429 |
Q |
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| T |
44419618 |
attatttgagtgaaggatatttaccttaagaaagtagac-aaatgatttgagtttattgttgcagacattgaagaaaaagatgtgaaattcatag |
44419711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 44419297 - 44419490
Alignment:
| Q |
16 |
atgctaatgattttctcaattgcattcagctcctcgtatgactggaattttggtcaagattttcacttatttattggagttgccaataattggaaccata |
115 |
Q |
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| T |
44419297 |
atgctaatgattttctcaattgcattcagctcctcgtatgactggaattttggtcaagattttcacttatttattggagttgccaataattggaaccata |
44419396 |
T |
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| Q |
116 |
ttgttgtacattttgctc-nnnnnnntcttattcatgaggtagtatacacttgg-ttcatgaatacacgacattatacaacatataacaagtgc |
207 |
Q |
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| T |
44419397 |
ttgttgtacattttgctcaaaaaaaatcttattcatgaggtagtatacacttggtttcatgaatacacgacattatacaacatataactagtgc |
44419490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 39558572 - 39558635
Alignment:
| Q |
241 |
tattacaaatgcagaactagaagagtcacctctgtatgttccattacatgattttgaaggtttg |
304 |
Q |
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| T |
39558572 |
tattacaaatgcagatatagaagagccacctctttatgttccattacatcattttgaaggtttg |
39558635 |
T |
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