View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_low_11 (Length: 433)
Name: NF13262_low_11
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_low_11 |
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| [»] chr3 (13 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 23466651 - 23466237
Alignment:
| Q |
18 |
aaacatagctttaaagatggccattggtggggttgggatgaggtcggaagagggccatctcaattccttgnnnnnnnnnnnggttacgtctcaattcctt |
117 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23466651 |
aaacatagctttaaagttggccattggtggggttgggatgagatcggaagagggccatctcaattccttgtttttttttt-ggttacgtctcaattcctt |
23466553 |
T |
|
| Q |
118 |
gttagtaaaaaaggatataaataagtttttaaataaataatttatcaaagcaggccgtcttcattaatattttctaaattggaccaaccattaaacaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23466552 |
gttagtaaaaaaggatataaataagtttttaaataaataatttatcaaagcaggccgtcttcattaatattttctaaattggaccaaccattaaacaaat |
23466453 |
T |
|
| Q |
218 |
gattggaccagccattgaacatgtgaagaaggttcaagattcaacggttcaactatatatgatatttgtttaaaggttacttaatttgattggtnnnnnn |
317 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23466452 |
gattggaccagccattgaacatgtgaataaggttcaagattcaacggttcaactatatatgatatttgtttaaaggttacttaatttgattggtaaaaaa |
23466353 |
T |
|
| Q |
318 |
ncaaatagaaagaaatggaaccttatgtaacaactatttagtttaatataggaaattagattcaccctatattatgtgcatcattgtttgtctaaatatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23466352 |
acaaatagaaagaaatggaaccttatgtaacaactatttagtttaatataggaaattagattcacactatattatgtgcatcattgtttgtctaaatatt |
23466253 |
T |
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| Q |
418 |
ctcttgttgccatatt |
433 |
Q |
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|||||||||||||||| |
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| T |
23466252 |
ctcttgttgccatatt |
23466237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 219 - 433
Target Start/End: Complemental strand, 23407788 - 23407571
Alignment:
| Q |
219 |
attggaccagccattgaacatgtgaagaaggttcaagattcaacggttcaactatatatgatatttgtttaaaggttacttaatttgattggtnnnnnnn |
318 |
Q |
| |
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||||||||| ||||||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
23407788 |
attggaccaaccattgaacatatgaagaaggttcaagattcaccg-ttcaactatat--gatatttgtttaaaggttactgaatttgattggtaaaaaaa |
23407692 |
T |
|
| Q |
319 |
caaatagaaagaaatggaaccttatgtaacaactatttagtttaata---taggaaat---tagattcaccctatattatgtgcatcattgtttgtctaa |
412 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
23407691 |
caaatagaaagaaatggaacctcctgtaacaactatttagtttaataatataggaaatatttagattcacactatattatgtgcatcattgtttgtctaa |
23407592 |
T |
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| Q |
413 |
atattctcttgttgccatatt |
433 |
Q |
| |
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||||||||||||||||||||| |
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| T |
23407591 |
atattctcttgttgccatatt |
23407571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 219 - 433
Target Start/End: Complemental strand, 23390043 - 23389834
Alignment:
| Q |
219 |
attggaccagccattgaacatgtgaagaaggttcaagattcaacggttcaactatatatgatatttgtttaaaggttacttaatttgattggtnnnnnnn |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| | |
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| T |
23390043 |
attggaccagccattgaacatgtgaagaaggttcaagattcaacggttcaac--catatggtatttgtttaaaggttactgaatttgattgct-aagaaa |
23389947 |
T |
|
| Q |
319 |
caaatagaaagaaatggaaccttatgtaacaactatttagtttaatataggaaattagattcaccctatattatgtgcatcattg-tttgtctaaatatt |
417 |
Q |
| |
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|||||||||| ||||||||||| ||||||||||| |||||||| ||||||||| ||||||||| || || ||||||| ||| ||| ||||||||| |
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| T |
23389946 |
caaatagaaaaaaatggaacctggtgtaacaactacttagtttagtataggaaactagattcac---attataagtgcatcgttgttttttctaaatatc |
23389850 |
T |
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| Q |
418 |
ctcttgttgccatatt |
433 |
Q |
| |
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||||||| |||||||| |
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| T |
23389849 |
ctcttgtagccatatt |
23389834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 23407874 - 23407764
Alignment:
| Q |
106 |
tctcaattccttgttagtaaaaaaggatataaataagtttttaaataaataatttatcaaagcaggccgtcttcattaatattttctaaattggaccaac |
205 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23407874 |
tctcaattccttgttaggaaaaaaggatataaataagtttttaaataaataatttatcaaagcag---gtcttcattaatattttctaaattggaccaac |
23407778 |
T |
|
| Q |
206 |
cattaaacaaatga |
219 |
Q |
| |
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|||| |||| |||| |
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| T |
23407777 |
cattgaacatatga |
23407764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 219 - 433
Target Start/End: Complemental strand, 23429824 - 23429623
Alignment:
| Q |
219 |
attggaccagccattgaacatgtgaagaaggttcaagattcaacggttcaactatatatgatatttgtttaaaggttacttaatttgattggtnnnnnnn |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
23429824 |
attggaccagccattgaacatgtgaagaaggttcaagattcaac----------tatatgatatttgtttaaaggttactgaatttgattggtaagaaa- |
23429736 |
T |
|
| Q |
319 |
caaatagaaagaaatggaaccttatgtaacaactatttagtttaatataggaaattagattcaccctatattatgtgcatcattg-tttgtctaaatatt |
417 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| || || ||||||| ||| ||| ||||||||| |
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| T |
23429735 |
caaatagaaagaaatggaacctggtgtaacaactacttagtttagtataggaaattagattcac---attataagtgcatcgttgttttttctaaatatc |
23429639 |
T |
|
| Q |
418 |
ctcttgttgccatatt |
433 |
Q |
| |
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||||||| |||||||| |
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| T |
23429638 |
ctcttgtagccatatt |
23429623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 219 - 382
Target Start/End: Complemental strand, 23444705 - 23444554
Alignment:
| Q |
219 |
attggaccagccattgaacatgtgaagaaggttcaagattcaacggttcaactatatatgatatttgtttaaaggttacttaatttgattggtnnnnnnn |
318 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| |||||||| |||||| |||||||||||||||||| || ||||||||| |
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|
| T |
23444705 |
attggaccagccattgaacgtgtgaagaaagttcacgattcaaca----------atatgacatttgtttaaaggttactgaaattgattggtaagaaa- |
23444617 |
T |
|
| Q |
319 |
caaatagaaagaaatggaaccttatgtaacaactatttagtttaatataggaaattagattcac |
382 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||||| |
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|
| T |
23444616 |
caaataaaaagaaatgga-cctcatgtaacaactatttactttaatatagaaaattagattcac |
23444554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 382
Target Start/End: Complemental strand, 23489735 - 23489584
Alignment:
| Q |
219 |
attggaccagccattgaacatgtgaagaaggttcaagattcaacggttcaactatatatgatatttgtttaaaggttacttaatttgattggtnnnnnnn |
318 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| |||||||| |||||| |||||||||||||||||| || ||||||||| |
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| T |
23489735 |
attggaccagccattgaacgtgtgaagaaagttcacgattcaaca----------atatgacatttgtttaaaggttactgaaattgattggtaagaaa- |
23489647 |
T |
|
| Q |
319 |
caaatagaaagaaatggaaccttatgtaacaactatttagtttaatataggaaattagattcac |
382 |
Q |
| |
|
|||||| ||||||||||| ||| || ||||| |||||||||||||||||| ||||||||||||| |
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|
| T |
23489646 |
caaataaaaagaaatgga-cctcatctaacagctatttagtttaatatagaaaattagattcac |
23489584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 23429866 - 23429805
Alignment:
| Q |
150 |
ataaataatttatcaaagcaggccgtcttcattaatattttctaaattggaccaaccattaaaca |
214 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
23429866 |
ataaataatttatcaaagcagg---tcttcattaatattttctaaattggaccagccattgaaca |
23429805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 23489818 - 23489721
Alignment:
| Q |
107 |
ctcaattccttgttagtaaaaaaggatataaataagtttttaaataaataatttatcaaagcaggccgtcttcattaatattttctaaattggaccaacc |
206 |
Q |
| |
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||||||||||||| ||||||| | |||||||| ||||||| | ||||||||||||||||||| | | ||||||||||||||||||||||||||| || |
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| T |
23489818 |
ctcaattccttgtgtgtaaaaa-gtatataaatcagtttttga-taaataatttatcaaagcatg---tattcattaatattttctaaattggaccagcc |
23489724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 23390085 - 23390024
Alignment:
| Q |
150 |
ataaataatttatcaaagcaggccgtcttcattaatattttctaaattggaccaaccattaaaca |
214 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
23390085 |
ataaataatttatcaaagcagg---tattcattaatattttctaaattggaccagccattgaaca |
23390024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 23444771 - 23444691
Alignment:
| Q |
125 |
aaaaaggatataaataagtttttaaataaataatttatcaaagcaggccgtcttcattaatattttctaaattggaccaaccatt |
209 |
Q |
| |
|
|||||| |||||||| ||||||| | ||||||||||||||||||| | | |||||||||||||||| |||||||||| ||||| |
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| T |
23444771 |
aaaaagtatataaatcagtttttga-taaataatttatcaaagcatg---tattcattaatattttctcaattggaccagccatt |
23444691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 23407933 - 23407862
Alignment:
| Q |
18 |
aaacatagctttaaagatggccattggtggggttggg--atgaggtcggaagagggccatctcaattccttg |
87 |
Q |
| |
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|||||||||||||| | ||||||| ||||| |||||| |||||||| ||| ||||||||||||||||||| |
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|
| T |
23407933 |
aaacatagctttaaggttggccatgggtggagttgggggatgaggtcccaagggggccatctcaattccttg |
23407862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 424
Target Start/End: Complemental strand, 23436971 - 23436878
Alignment:
| Q |
331 |
aatggaaccttatgtaacaactattta-gtttaatataggaaattagattcaccctatattatgtgcatcattgtttgtctaaatattctcttgt |
424 |
Q |
| |
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|||||||||||||| | ||| ||||| |||||| |||||||| ||||||||| |||||| ||| ||||||||||| |||||||| ||||||| |
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| T |
23436971 |
aatggaaccttatgcaccaattattttcgtttaacataggaaactagattcacactatatg-tgtacatcattgttttcctaaatatcctcttgt |
23436878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 21542615 - 21542544
Alignment:
| Q |
319 |
caaatagaaagaaatggaaccttatgtaacaactatt-tagtttaatataggaaattagattcaccctatat |
389 |
Q |
| |
|
||||| |||| ||||||||| | ||||||| ||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
21542615 |
caaatggaaacaaatggaacatcatgtaaccactatagtactttaatataggaaattaaattcaccctatat |
21542544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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