View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_low_13 (Length: 427)
Name: NF13262_low_13
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 6808218 - 6808627
Alignment:
| Q |
1 |
caactagtgaaagaacactttgtagctgcgctgaggaaccttccgaaacatagccgaactcagatcaaagtacagagggagttggaccaaggcaaaaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6808218 |
caactagtgaaagaacactttgtagctgcgctgaggaaccttccgaaacatagccgaactcagatcaaagtacagagggagttggaccaaggcaaaaaag |
6808317 |
T |
|
| Q |
101 |
gacacaggcaaacatgttaaagcatatatgggataaactgcagttctcagctggtgttcaacaatgaagaaatgccctgcacagaatgagaccaatacag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6808318 |
gacacaggcaaacatgttaaagcatatatgggataaactgcagttctcagctggtgttcaacaatgaagaaatgccctgcacagaatgagaccaatacag |
6808417 |
T |
|
| Q |
201 |
atgctatagatgtgaagagtgtagtcaaccctagaagaagcttttttggtaagtccacaagaaaatccttttcttgaaaccgagacgttagtatcgaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6808418 |
atgctatagatgtgaagagtgtagtcaaccctagaagaagcttttttggtaagtccacaagaaaatccttttcttgaaaccgagacgttagtatcgaaag |
6808517 |
T |
|
| Q |
301 |
aaacataacaagagccatgacagaggagcaaagtgcaacaagtgatgctacagcatatagtttgaaaacaggcttttttaggaatattggtataccatca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6808518 |
aaacataacaagagccatgacagaggagcaaagtgcaacaagtgatgctacagcatatagtttgaaaacaggcttttttaggaatattggtataccatca |
6808617 |
T |
|
| Q |
401 |
tcatcataac |
410 |
Q |
| |
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|||||||||| |
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| T |
6808618 |
tcatcataac |
6808627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 4 - 377
Target Start/End: Original strand, 6830610 - 6830983
Alignment:
| Q |
4 |
ctagtgaaagaacactttgtagctgcgctgaggaaccttccgaaacatagccgaactcagatcaaagtacagagggagttggaccaaggcaaaaaatgac |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6830610 |
ctagtgaaagaacactttgtagctgcgctgaggaaccttccgacacatagccaaactcagatcaaagtacagagggagttggaccaaggcaaaaaaggat |
6830709 |
T |
|
| Q |
104 |
acaggcaaacatgttaaagcatatatgggataaactgcagttctcagctggtgttcaacaatgaagaaatgccctgcacagaatgagaccaatacagatg |
203 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||| ||||| |||| ||| ||||| |||||||| |||||||||||||||||||| ||||||| |
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| T |
6830710 |
acaggcagacatgttgcggcatatatgggataaactgcaaatctcatctgggcttcgacaataaagaaatgtcctgcacagaatgagaccaacacagatg |
6830809 |
T |
|
| Q |
204 |
ctatagatgtgaagagtgtagtcaaccctagaagaagcttttttggtaagtccacaagaaaatccttttcttgaaaccgagacgttagtatcgaaagaaa |
303 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||| | || |||||| ||||||| ||||||||| || ||||| |||||||| |
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| T |
6830810 |
ctatagatgtgaagagtgtagtcaaccctacaagaagctttcttggtaagtcaataacaaaatctttttcttcaaaccgagatgtgagtatggaaagaaa |
6830909 |
T |
|
| Q |
304 |
cataacaagagccatgacagaggagcaaagtgcaacaagtgatgctacagcatatagtttgaaaacaggctttt |
377 |
Q |
| |
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|| |||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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|
| T |
6830910 |
caaaacaagggctgtgacagaggagcaaagtgcaacaagtgatgctacagcatagagtttgaaagcaggctttt |
6830983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 6816186 - 6816576
Alignment:
| Q |
8 |
tgaaagaacactttgtagctgcgctgaggaaccttccgaaacatagccgaactcagatcaaagtacagagggagttggaccaaggcaaaaaatgacacag |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| |||||||||||||| ||||||| |
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| T |
6816186 |
tgaaagaacactttgtagctgcgctgaggaaccttccgacacatagccaaactcagatcaaagtacagaggaagttgaaccaaggcaaaaaaggacacag |
6816285 |
T |
|
| Q |
108 |
gcaaacatgttaaagcatatatgggataaactgcagttctcagctggtgttcaacaatgaagaaatgccctgcacagaatgagaccaatacagatgctat |
207 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||| |||||||||| |||||||||| ||| |||| |||||||||||||||| ||| ||||||||||| |
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| T |
6816286 |
gcaaacatgttgcagcatatattggataaaatgcaaatctcagctggggttcaacaataaagtaatgtcctgcacagaatgagatcaacacagatgctat |
6816385 |
T |
|
| Q |
208 |
agatgtgaagagtgtagtcaaccctagaagaagcttttttggtaagtccacaagaaaatccttttcttgaaaccgagacgttagtatcgaaagaaacata |
307 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||| ||||||| ||||| ||| || ||||||||||||||| | |
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| T |
6816386 |
agatgtgaagagtgtagtcaaccctacaagaagccttcttggtaagtccacaacaaaatctttttcttcaaacctagatgtgagtatcgaaagaaacgaa |
6816485 |
T |
|
| Q |
308 |
acaagagccatgacagaggagcaaagtgcaacaagtgatgctacagcatatagtttgaaaacaggcttttttaggaatattggtataccat |
398 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||||||| ||||||| |||||| || |||| | ||| | |||| ||||||||||| |
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| T |
6816486 |
acaagagctgtgacagagaagcaaagtgcaacaagtgatgctgcagcatagagtttgtaagcaggttctttcataaatagtggtataccat |
6816576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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