View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_low_17 (Length: 405)
Name: NF13262_low_17
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 40999869 - 41000243
Alignment:
| Q |
18 |
agaacaaccttattatatgacatgcatcgaactttcataatttatcacatcttatcataaatatgatgttagagaccgttcaaattcaaatcattattag |
117 |
Q |
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| T |
40999869 |
agaacaaccttattatatgacatgcgtcgaactttcataatttatcacatcttatcataaatatgatgttagagaccgttcaaattcaaatcattattag |
40999968 |
T |
|
| Q |
118 |
tttaaaccactcatttttcttgatctttctctataaataagcaattaagttatatttgaccgtaattgtgttcgcgacatcctgttaatgttatgcagca |
217 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40999969 |
tttaaaccactaatttttcttgatctttctctataaataagcaattaagttatatttgaccgtaattgtgttcgcgacatcctgttaatgttacgcagca |
41000068 |
T |
|
| Q |
218 |
ggaatataaagtgtacttaagagtatcatttgcgtaattgcttaaagtttaatgtgatgat--ccaagaccctttcggacccaaaattctgtgctgtact |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
41000069 |
ggaatataaagtgtacttaagagtatcatttgcgtaattgcttaaagtttaatgtgatgatccccaagaccctttcggacccaaaattctgtg-----ct |
41000163 |
T |
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| Q |
316 |
caagacatggcagatgacaattcttgcaagtacacttcattgagtactgaaagacatcctatttctgccaacatcctatg |
395 |
Q |
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| T |
41000164 |
caagacatggcagatgacaattcttgcaagtacacttcattgagtactgaaagacatcctatttctgccaacatcctatg |
41000243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 20852208 - 20852582
Alignment:
| Q |
18 |
agaacaaccttattatatgacatgcatcgaactttcataatttatcacatcttatcataaatatgatgttagagaccgttcaaattcaaatcattattag |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20852208 |
agaacaaccttattatatgacatgcgtcgaactttcataatttatcacatcttatcataaatatgatgttagagaccgttcaaattcaaatcattattag |
20852307 |
T |
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| Q |
118 |
tttaaaccactcatttttcttgatctttctctataaataagcaattaagttatatttgaccgtaattgtgttcgcgacatcctgttaatgttatgcagca |
217 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20852308 |
tttaaaccactaatttttcttgatctttctctataaataagcaattaagttatatttgaccgtaattgtgttcgcgacatcctgttaatgttacgcagca |
20852407 |
T |
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| Q |
218 |
ggaatataaagtgtacttaagagtatcatttgcgtaattgcttaaagtttaatgtgatgat--ccaagaccctttcggacccaaaattctgtgctgtact |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
20852408 |
ggaatataaagtgtacttaagagtatcatttgcgtaattgcttaaagtttaatgtgatgatccccaagaccctttcggacccaaaattctgtg-----ct |
20852502 |
T |
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| Q |
316 |
caagacatggcagatgacaattcttgcaagtacacttcattgagtactgaaagacatcctatttctgccaacatcctatg |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20852503 |
caagacatggcagatgacaattcttgcaagtacacttcattgagtactgaaagacatcctatttctgccaacatcctatg |
20852582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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