View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_low_18 (Length: 402)
Name: NF13262_low_18
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 36795279 - 36795664
Alignment:
| Q |
1 |
ggggtgatgtgtctcctattcttcctcaattttataaatttacgaaacgtagtcaccacatgggtttgatttgattatgctcttgctgaaatagaaaaaa |
100 |
Q |
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| T |
36795279 |
ggggtgatgtgtctcctattcttcctcaattttataaatttacgaaacgtagtcaccacatgggttttatttgattatgctcttgctgaaatagaaaaaa |
36795378 |
T |
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| Q |
101 |
gtatccacgttccacgtgctagacaccgttcatgtggccatgagaaaataagtgtgtagttgtgtactagactactagtgttgctttcacaagttgaatc |
200 |
Q |
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| T |
36795379 |
gtatccacgttccacgtgctagacaccgttcatgtggccatgagaaaataagtgtgtagtagtgtactagactactagtgttgctttcacaagttgaatc |
36795478 |
T |
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| Q |
201 |
tctccttgcaagtggaaacccaagtttttcagtttttctgcgaacacgtgcacaaatgctttgaggttttttcttagtagcaagaggcaaagcacctacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36795479 |
tctccttgcaagtggaaacccaagtttttcagtttttctgcgaacacgtgcacaaatgctttgaggttttttcttagtagcaagaggcaaagcacctacc |
36795578 |
T |
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| Q |
301 |
acatatgccttgagtactacaatatccccaaataaaggatccctttgaataaatttaatggaatcaaaaaagttggttgtgctatt |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36795579 |
acatatgccttgagtactacaatatccccaaataaaggatccctttgaataaatttaatggaatcaaaaaagttggttgtgctatt |
36795664 |
T |
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