View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_low_22 (Length: 371)
Name: NF13262_low_22
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 30831436 - 30831787
Alignment:
| Q |
1 |
agttatgcatacttagattccttagaggtaaagagtaaagacccaatttctcaccatattccatcatcattttggcatggtcagaagaactacgtggatg |
100 |
Q |
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| T |
30831436 |
agttatgcatacttagattccttagaggtaaagagtaaagacccaatttctcaccatattccatcatcattttggcatggtcagaagaactacgtggatg |
30831535 |
T |
|
| Q |
101 |
agaaatcattcattttgcatcataaggaatgcttataatattggttcggatctcctcctgttgatatgctaaatattctttctaatatctacaaattttt |
200 |
Q |
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| T |
30831536 |
agaaatcattcattttgcatcataaggaatgcttataatattggttcggatctcctcctgttgatatgctaaatattctttctaatatctacaatttttt |
30831635 |
T |
|
| Q |
201 |
tgactcaattgttaaggaaatgatctctaatggtaaatattctttctaatatctaaatatttggtgcaacttcctagctcccttccttcctctcatccat |
300 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30831636 |
tgactcaactgttaaggaaatgatctctaatgctaaatattctttctaatatctaaatatttggtgcaacttcctaggtcccttccttcctctcatccat |
30831735 |
T |
|
| Q |
301 |
tccatttttggagactccttcatgctaagttacccacaaatgataacctttg |
352 |
Q |
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| T |
30831736 |
tccatttttggagactccttcatgctaagttacccacaaatgataacctttg |
30831787 |
T |
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