View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_low_24 (Length: 364)
Name: NF13262_low_24
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 349
Target Start/End: Original strand, 41750257 - 41750593
Alignment:
| Q |
9 |
gaagaatatacccttattctgaaactccaatccgtctccatcactccattccgaaaatcgcataaatattcacggatataactagatatagtatagatcc |
108 |
Q |
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| T |
41750257 |
gaagaatatacccttattctgaaactccaatccgtctccatcactccattccgaaaatcgcataaatattcacggatataactagatatagtatagatcc |
41750356 |
T |
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| Q |
109 |
tggtgaagtactaaccacctccaaccagcttcatttcaattttccatatctacacacggatatgccaaaaaattgcaagagatcattcatttgtatagaa |
208 |
Q |
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| T |
41750357 |
tggtgaagtactaaccacctccaaccagcttcatttcaattttccatatctacacacggatatgccaaaaaattgcaagagatcattcatttgtatagaa |
41750456 |
T |
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| Q |
209 |
aaataacatggaaattatnnnnnnnnnnnnnnaagagtaaatttatcacagacattagacaatgatataatatttttatcaaaaattataaatgttaaag |
308 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41750457 |
aaataacatggaaattat----gagagagagaaagagtaaatttatcacagacattagacaatgatataatatttttatcaaaaattataaatgttaaag |
41750552 |
T |
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| Q |
309 |
agtatgattttgtaaatgtagaattgtttacactcttattt |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
41750553 |
agtatgattttgtaaatgtagaattgtttacactcttattt |
41750593 |
T |
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