View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_low_25 (Length: 358)
Name: NF13262_low_25
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_low_25 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 4 - 358
Target Start/End: Original strand, 11118628 - 11118972
Alignment:
| Q |
4 |
atgatatttagataagatgatatgagtctccttaatttttaatttgaatttaatcatgaaccatagtgatattaaaatttaaactattgaggagagttgt |
103 |
Q |
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| T |
11118628 |
atgatatttagataagatgatatgagcctccttaattttaaatttgaatttaatcatgtaccatagtgatattaaaattta------------------t |
11118709 |
T |
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| Q |
104 |
cgcgactttagatttcacatgactcggat--------nnnnnnnnnnggacaaactgcatccattaacaatcaaataagnnnnnnnaaaagtaattaaat |
195 |
Q |
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| T |
11118710 |
cgcgactttagatttcacatgactcggataaaaaaaaaaaaaaaaaaggacaaactgcatccattaacactcaaataagtatttttaaaagtaattaaat |
11118809 |
T |
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| Q |
196 |
tttgatgaggaattgtttgaactaggattcaaactcgaattcttccgnnnnnnntgtgtatcttactagatcttattaatccctagagctatatagcaca |
295 |
Q |
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| T |
11118810 |
cttgatgaggaattgtttgaactaggattcaaactcgaattcttccaaaaaaaatgtgtatcttactagatcttattaatccctagagctatatagcaca |
11118909 |
T |
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| Q |
296 |
tgatgtaggagtatatgatttacttgaatgcttcaatttcaggtgcccatacattaggaagag |
358 |
Q |
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| T |
11118910 |
tgatgtaggagtatatgatttacttgaatggttcaatttcaggtgcccatacattaggaagag |
11118972 |
T |
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