View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_low_30 (Length: 312)
Name: NF13262_low_30
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_low_30 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 6993342 - 6993031
Alignment:
| Q |
1 |
attggagtctttcaatgcttctgggttcatgctcaatggttctattcctgagtggtttggtgagaagcttggtgcactaaaagagcttgatttaaggtct |
100 |
Q |
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| T |
6993342 |
attggagtctttcaatgcttctgggttcatgctcaatggttctattcctgagtggtttggtgagaagcttggtgcactaaaagagcttgatttaaggtct |
6993243 |
T |
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| Q |
101 |
tgttcaatatctggtgtgattcctggttcacttgggggcatgagaagtttgaagaagttgtttctttcaaggaacaatcttactagtagagtgccttcag |
200 |
Q |
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| T |
6993242 |
tgttcaatatctggtgtgattcctggttcacttgggggcatgagaagtttgaagaagttgtttctttcaaggaacaatcttactagtagagtgccttcag |
6993143 |
T |
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| Q |
201 |
gtttggggttgttatctaatctttctattctcgatctctctaggaatttgctttcaggatcagtacctgaatctttctctaagctcggtaacattacaag |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6993142 |
gtttggggttgttatctaatctttctattcttgatctctctaggaatttgctttcaggatcagtacctgaatctttctctaagctcggtaacattacaag |
6993043 |
T |
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| Q |
301 |
gcttgatctttc |
312 |
Q |
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| T |
6993042 |
gcttgatctttc |
6993031 |
T |
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