View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13262_low_39 (Length: 258)

Name: NF13262_low_39
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13262_low_39
NF13262_low_39
[»] chr1 (1 HSPs)
chr1 (17-239)||(48838698-48838921)
[»] chr3 (3 HSPs)
chr3 (59-167)||(43978626-43978733)
chr3 (49-121)||(53595950-53596021)
chr3 (49-121)||(53596265-53596336)
[»] chr2 (2 HSPs)
chr2 (48-167)||(19548133-19548251)
chr2 (91-155)||(40801137-40801201)
[»] chr7 (1 HSPs)
chr7 (48-121)||(23578101-23578173)
[»] chr8 (1 HSPs)
chr8 (49-129)||(2954597-2954676)
[»] chr5 (3 HSPs)
chr5 (58-149)||(8215497-8215586)
chr5 (89-121)||(13043025-13043057)
chr5 (89-121)||(13113021-13113053)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 48838698 - 48838921
Alignment:
Q  17 aatatagatttattctgataatgtattcattattgttggatttcaagtgtgagtgattaaagtctcacacttactagaaatagagaaaacattggatata 116  Q
    |||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48838698 aatataaatttattctgttaatgtatccattattgttggatttcaagtgtgagtgattaaagtctcacacttactaaaaatagagaaaacattggatata 48838797  T
Q  117 taagacagaaga-cttatatatctattgttttaatgttttgggtggatatgttgtctgcaagtcttttggtggttgtggatgtttagtccattgccgatt 215  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||    
T  48838798 taagacagaaaaacttatatatctattgttttaatgttttgggtggatatgttgtgtgtaagtcatttggtggttgtggatgtttagtccattgccgatt 48838897  T
Q  216 tcgatgctctccaaacttcctaac 239  Q
    |||| |||||||||||||||||||    
T  48838898 tcgacgctctccaaacttcctaac 48838921  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 43978733 - 43978626
Alignment:
Q  59 tcaagtgtgagtgattaaagtctcacacttactagaaatagagaaaacattggatatataagacagaagacttatatatctattgttttaatgttttggg 158  Q
    |||||||||||||||||  ||| ||||   ||||| ||| ||| ||||||||||||||||||| || ||||| ||||| ||||||  |||| ||||||||    
T  43978733 tcaagtgtgagtgattat-gtcccacatcgactaggaatggaggaaacattggatatataagagaggagactcatatacctattgccttaaggttttggg 43978635  T
Q  159 tggatatgt 167  Q
    |||| ||||    
T  43978634 tggagatgt 43978626  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 53595950 - 53596021
Alignment:
Q  49 ttgttggatttcaagtgtgagtgattaaagtctcacacttactagaaatagagaaaacattggatatataaga 121  Q
    ||||||||  ||||||| |||||||||  ||| |||| | |||||||||||||||||  ||||||||||||||    
T  53595950 ttgttggaaatcaagtgcgagtgattat-gtcccacattgactagaaatagagaaaatgttggatatataaga 53596021  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 53596265 - 53596336
Alignment:
Q  49 ttgttggatttcaagtgtgagtgattaaagtctcacacttactagaaatagagaaaacattggatatataaga 121  Q
    ||||||||  ||||||| |||||||||  ||| |||| | |||||||||||||||||  ||||||||||||||    
T  53596265 ttgttggaaatcaagtgcgagtgattat-gtcccacattgactagaaatagagaaaatgttggatatataaga 53596336  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 167
Target Start/End: Original strand, 19548133 - 19548251
Alignment:
Q  48 attgttggatttcaagtgtgagtgattaaagtctcacacttactagaaatagagaaaacattggatatataagacagaagacttatatatctattgtttt 147  Q
    |||||||| ||||||| ||||||| |||  ||| ||||   ||||||||||||| |||  |||||||||||||| || ||||  ||||||||| ||| ||    
T  19548133 attgttgggtttcaagcgtgagtggttat-gtcccacatcgactagaaatagaggaaatgttggatatataagagaggagacccatatatctaatgtctt 19548231  T
Q  148 aatgttttgggtggatatgt 167  Q
    || |||||||||||| ||||    
T  19548232 aaggttttgggtggagatgt 19548251  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 40801201 - 40801137
Alignment:
Q  91 tagaaatagagaaaacattggatatataagacagaagacttatatatctattgttttaatgtttt 155  Q
    ||||||| |||||||| || ||||||||||| |||||| ||||||| ||| ||| ||||||||||    
T  40801201 tagaaattgagaaaacgtttgatatataagagagaagatttatatacctaatgtcttaatgtttt 40801137  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 23578173 - 23578101
Alignment:
Q  48 attgttggatttcaagtgtgagtgattaaagtctcacacttactagaaatagagaaaacattggatatataaga 121  Q
    |||||||| ||||| |||||||||||||| ||| ||||   | ||||||| |||||||| ||||||||||||||    
T  23578173 attgttgggtttcatgtgtgagtgattaa-gtcccacatcgagtagaaatggagaaaacgttggatatataaga 23578101  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 2954676 - 2954597
Alignment:
Q  49 ttgttggatttcaagtgtgagtgattaaagtctcacacttactagaaatagagaaaacattggatatataagacagaagac 129  Q
    ||||||| |||||||||||||||||| | ||| ||||   ||||| ||| |||||||  |||||||||||||| |||||||    
T  2954676 ttgttgggtttcaagtgtgagtgatt-atgtcccacatagactaggaatggagaaaatgttggatatataagagagaagac 2954597  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 8215586 - 8215497
Alignment:
Q  58 ttcaagtgtgagtgattaaagtctcacacttactagaaatagagaaaacattggatatataagacagaagacttatatatctattgttttaa 149  Q
    |||||||||||||| |||   ||||||||  |||| |||||||||||| |||| |||||||| | ||| ||||||||||  |||||| ||||    
T  8215586 ttcaagtgtgagtggttac--tctcacaccaactaaaaatagagaaaatattgtatatataaaagagacgacttatatacttattgtcttaa 8215497  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 13043025 - 13043057
Alignment:
Q  89 actagaaatagagaaaacattggatatataaga 121  Q
    ||||||||||||| |||||||||||||||||||    
T  13043025 actagaaatagagcaaacattggatatataaga 13043057  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 13113021 - 13113053
Alignment:
Q  89 actagaaatagagaaaacattggatatataaga 121  Q
    ||||||||||||| |||||||||||||||||||    
T  13113021 actagaaatagagcaaacattggatatataaga 13113053  T

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