View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_low_42 (Length: 250)
Name: NF13262_low_42
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_low_42 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 15489509 - 15489746
Alignment:
| Q |
13 |
aatattacactttcatatgtcaataaacaagttcaaataagtcgatccaaacaagtccataatttatacataaacagaaaacagtggtaggaaagaaaga |
112 |
Q |
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| T |
15489509 |
aatatcacactttcatatgtcaataaacaagtacagataagtcgatccaaacaagtccataatttatacataaacagaaaacagtggtcggaaagaaaga |
15489608 |
T |
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| Q |
113 |
tggagttcttacaattaggaatgatgcaaggaagaaacttcaatcccccatcatcaatggaatcaagagctttcttccaaccatgatcacactcacactc |
212 |
Q |
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| T |
15489609 |
tggagttcttacaattaggaatgatgcaaggaagaaacttcaatccctcatcatcaatggaatcaagagctttcttccaaccatgatcacactcacactc |
15489708 |
T |
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| Q |
213 |
aaaagggaaagtactattcttagaaggtttgcatgttc |
250 |
Q |
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| T |
15489709 |
aaaagggaaagtactattcttagaaggtttgcatgttc |
15489746 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 33267462 - 33267427
Alignment:
| Q |
41 |
aagttcaaataagtcgatccaaacaagtccataatt |
76 |
Q |
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| T |
33267462 |
aagttcaaataagtcaatccaaacaagtccataatt |
33267427 |
T |
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