View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_low_49 (Length: 226)
Name: NF13262_low_49
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 8841965 - 8842170
Alignment:
| Q |
1 |
atctacactcttccctctctcgccgcgacaaatcacgcctttctcattcctcctcctccacttcaaccactgcccctcgaagaccgcatcaccacccgcc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8841965 |
atctacactcttccctctctcgccgcgacaaaccacgcctttctcattcctcgtcctccacttcaaccactgccc-tcgaagaccgcatcaccacccgcc |
8842063 |
T |
|
| Q |
101 |
aatgcgaaaaccaaaccctccatgtcaaccaacgtcttgccacaactcacctcgccctcaaacaagacctctccgccacacaacaagagcttcgtcagct |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8842064 |
aatgcgaaaaccaaaccctccatgtcaaccaacgtcttgccacaactcacctcgccctcaaacaagacctctccgccacacaacaagagcttcgtcatct |
8842163 |
T |
|
| Q |
201 |
ctctacc |
207 |
Q |
| |
|
||||||| |
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|
| T |
8842164 |
ctctacc |
8842170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 30972532 - 30972739
Alignment:
| Q |
1 |
atctacactcttccctctctcgccgcgacaaatcacgcctttctcattcctcctcctcc---acttcaaccactgcccctcgaagaccgcatcaccaccc |
97 |
Q |
| |
|
|||| |||||||| ||||| ||||||||| | |||| || |||||||||||||||||| || |||||||| |||| ||||||||||||||||||||| |
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| T |
30972532 |
atcttcactcttctctctcccgccgcgacgagccacgtctctctcattcctcctcctcctccacctcaaccaccgccc-tcgaagaccgcatcaccaccc |
30972630 |
T |
|
| Q |
98 |
gccaatgcgaaaaccaaaccctcc---atgtcaaccaacgtcttgccacaactcacctcgccctcaaacaagacctctccgccacacaacaagagcttcg |
194 |
Q |
| |
|
|||| |||||| ||||||||||| | | |||||||||||| |||||||||||||||||| | |||||||||||| ||||||| |||||||||||||| |
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| T |
30972631 |
gccaccgcgaaatccaaaccctcctccacgacaaccaacgtctcgccacaactcacctcgccttaaaacaagacctcaccgccactcaacaagagcttcg |
30972730 |
T |
|
| Q |
195 |
tcagctctc |
203 |
Q |
| |
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||||||||| |
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|
| T |
30972731 |
tcagctctc |
30972739 |
T |
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