View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13262_low_52 (Length: 221)

Name: NF13262_low_52
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13262_low_52
NF13262_low_52
[»] chr5 (3 HSPs)
chr5 (1-204)||(7505289-7505491)
chr5 (42-204)||(30085525-30085686)
chr5 (33-119)||(41484266-41484352)
[»] chr4 (11 HSPs)
chr4 (3-204)||(48085146-48085346)
chr4 (42-204)||(13779869-13780030)
chr4 (42-204)||(35033216-35033377)
chr4 (1-188)||(4291977-4292163)
chr4 (8-204)||(41222952-41223140)
chr4 (127-204)||(41809251-41809328)
chr4 (80-191)||(31228948-31229060)
chr4 (9-119)||(50859422-50859534)
chr4 (33-104)||(25054800-25054871)
chr4 (9-64)||(41809180-41809235)
chr4 (19-109)||(35292672-35292762)
[»] chr1 (10 HSPs)
chr1 (9-204)||(41404758-41404953)
chr1 (9-167)||(15582224-15582384)
chr1 (1-204)||(32573637-32573833)
chr1 (20-206)||(34970737-34970922)
chr1 (37-119)||(7521732-7521814)
chr1 (37-119)||(49765573-49765655)
chr1 (77-119)||(35306269-35306311)
chr1 (135-204)||(41419015-41419085)
chr1 (42-111)||(50677493-50677562)
chr1 (71-119)||(29465514-29465562)
[»] chr3 (9 HSPs)
chr3 (42-204)||(32278983-32279144)
chr3 (42-204)||(44713946-44714108)
chr3 (42-204)||(25045997-25046158)
chr3 (19-109)||(39439279-39439369)
chr3 (71-119)||(2144593-2144641)
chr3 (9-154)||(27011861-27012005)
chr3 (77-119)||(35231285-35231327)
chr3 (37-119)||(42028651-42028733)
chr3 (8-154)||(40022901-40023046)
[»] chr2 (7 HSPs)
chr2 (42-204)||(28198557-28198718)
chr2 (14-190)||(22017695-22017871)
chr2 (13-107)||(17998987-17999081)
chr2 (68-193)||(23701583-23701708)
chr2 (71-119)||(12432857-12432905)
chr2 (19-109)||(10354878-10354968)
chr2 (37-119)||(28219705-28219787)
[»] chr7 (7 HSPs)
chr7 (42-204)||(19626041-19626201)
chr7 (1-106)||(19848458-19848563)
chr7 (77-191)||(12634007-12634122)
chr7 (71-119)||(28300772-28300820)
chr7 (8-119)||(36656808-36656919)
chr7 (164-204)||(3215343-3215383)
chr7 (164-204)||(19848372-19848412)
[»] scaffold0039 (2 HSPs)
scaffold0039 (8-119)||(57646-57757)
scaffold0039 (164-204)||(57568-57608)
[»] chr8 (4 HSPs)
chr8 (10-204)||(34924031-34924218)
chr8 (1-105)||(29844962-29845066)
chr8 (72-204)||(14111686-14111811)
chr8 (176-204)||(31904440-31904468)
[»] scaffold0022 (2 HSPs)
scaffold0022 (37-154)||(43501-43618)
scaffold0022 (37-154)||(77221-77338)
[»] chr6 (2 HSPs)
chr6 (32-119)||(29644639-29644726)
chr6 (71-119)||(10144783-10144831)
[»] scaffold0011 (1 HSPs)
scaffold0011 (5-119)||(8538-8651)
[»] scaffold0127 (1 HSPs)
scaffold0127 (167-204)||(29540-29577)
[»] scaffold0075 (1 HSPs)
scaffold0075 (71-119)||(12150-12198)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 7505289 - 7505491
Alignment:
Q  1 aacggagcggaatggaacggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgac 100  Q
    ||||||| |||||||||| |||||||||||||||| |||||||| ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||    
T  7505289 aacggagtggaatggaacagaataaaaattatattccattatttagatactttatgatggaatggagctaattttccattccattgtttgaaaagttgac 7505388  T
Q  101 ggaacggaatgagttataannnnnnnattcaaattttaccctttatttaaaaaacatcattaggttgaattttcaactcaattcaatcaatatgttgtta 200  Q
    ||||||||||||||||||        |||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7505389 ggaacggaatgagttatatcttttttattccaattttaccttttattt-aaaaacatcattaggttgaattttcaactcaattcaatcaatatgttgtta 7505487  T
Q  201 tttt 204  Q
    ||||    
T  7505488 tttt 7505491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 30085686 - 30085525
Alignment:
Q  42 tttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatgagttataannnnnnnattcaaattttaccc 141  Q
    |||||||| ||||| ||||||| |  ||||||||||| ||||||||||| |||||  | |||||||||||| ||||||       |||  | ||||||||    
T  30085686 tttggatattttactacggaattgaactaattttccactccattgtttggaaagtgaatggaacggaatgatttataacttttttatttcatttttaccc 30085587  T
Q  142 tttatttaaaaaacatcattaggttgaattttcaactcaattcaatcaatatgttgttatttt 204  Q
    |||| ||||||| ||||| || |||||||| |||||||||||||||||||| || ||||||||    
T  30085586 tttacttaaaaa-catcactatgttgaattctcaactcaattcaatcaatacgtagttatttt 30085525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 41484352 - 41484266
Alignment:
Q  33 atttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatgagttataa 119  Q
    |||||||| |||||||| ||||||| |||| ||  | |||| | |||||||||||||  |||||  |||||||||||||| ||||||    
T  41484352 atttcattgtttggatattttacgatggaacggaacaaattattcattccattgtttagaaagtgaacggaacggaatgaattataa 41484266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 204
Target Start/End: Complemental strand, 48085346 - 48085146
Alignment:
Q  3 cggagcggaatggaacggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacgg 102  Q
    |||||| |||||||||||||||||||||| ||| |||| |||||||| ||||||| ||||||  |||||||||||||||| ||||||||||| | |||||    
T  48085346 cggagcagaatggaacggaataaaaattacattccattgtttggata-tttacgatggaatgaagctaattttccattcctttgtttgaaaaatcgacgg 48085248  T
Q  103 aacggaatgagttataannnnnnnattcaaattttaccctttatttaaaaaacatcattaggttgaattttcaactcaattcaatcaatatgttgttatt 202  Q
    |||||||| | ||||||       |||| |||||||||||||||||||||||||||| | || |||||||| ||||||||||||||||||||||||||||    
T  48085247 aacggaattaattataacttttttattccaattttaccctttatttaaaaaacatcaattggctgaatttttaactcaattcaatcaatatgttgttatt 48085148  T
Q  203 tt 204  Q
    ||    
T  48085147 tt 48085146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 13780030 - 13779869
Alignment:
Q  42 tttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatgagttataannnnnnnattcaaattttaccc 141  Q
    |||||||| ||||| |||||||||  ||||||||||| ||||||||||| |||||  | |||||||||||| ||||||       |||| | |||||||     
T  13780030 tttggatattttactacggaatggaactaattttccactccattgtttggaaagtgaatggaacggaatgatttataatttttttattccatttttacca 13779931  T
Q  142 tttatttaaaaaacatcattaggttgaattttcaactcaattcaatcaatatgttgttatttt 204  Q
    |||| || |||||||||| || |||||||| |||||||||||||||||||| || ||||||||    
T  13779930 tttactt-aaaaacatcactatgttgaattctcaactcaattcaatcaatacgtagttatttt 13779869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 35033216 - 35033377
Alignment:
Q  42 tttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatgagttataannnnnnnattcaaattttaccc 141  Q
    |||||||| ||||| |||||||||  ||||||||||| ||||||||||| |||||  | |||||||||||| ||||||       |||| | |||||||     
T  35033216 tttggatattttactacggaatggaactaattttccactccattgtttggaaagtgaatggaacggaatgatttataatttttttattccatttttacca 35033315  T
Q  142 tttatttaaaaaacatcattaggttgaattttcaactcaattcaatcaatatgttgttatttt 204  Q
    |||| || |||||||||| || |||||||| |||||||||||||||||||| || ||||||||    
T  35033316 tttactt-aaaaacatcactatgttgaattctcaactcaattcaatcaatacgtagttatttt 35033377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 4291977 - 4292163
Alignment:
Q  1 aacggagcggaatggaacggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgac 100  Q
    |||||||||||||||||||||| | | |||  ||| |||| |||||||| |||| |||||||||    ||  |||| ||||||||||||| ||||| |||    
T  4291977 aacggagcggaatggaacggaacacatattcaattccattgtttggatattttatgacggaatgaatttagatttctattccattgtttggaaagtggac 4292076  T
Q  101 ggaacggaatgagttataannnnnnnattcaaattttaccctttatttaaaaaacatcattaggttgaattttcaactcaattcaatc 188  Q
    ||||| ||||||||||||        |||| ||||||||||||| |||||||||||||| |||||| |||| |||| |||| ||||||    
T  4292077 ggaacagaatgagttata-gcctttaattccaattttaccctttgtttaaaaaacatcaataggttaaattctcaagtcaactcaatc 4292163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 41222952 - 41223140
Alignment:
Q  8 cggaatggaacggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacgg 107  Q
    ||||| |||| |||||||| |||  ||| |||| ||||||||||||| || |||| ||  ||| ||||||||||||||||||| |||||| |||||||||    
T  41222952 cggaacggaatggaataaagattccattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagttaacggaacgg 41223051  T
Q  108 aatgagttataannnnnnnattcaaattttaccctttatttaaaaaacatcattaggttgaattttcaactcaattcaatcaatatgttgttatttt 204  Q
    || |||||||||       |||| |||||||||| |||| |||||||       | |||||||| || ||||||| |||||||||||||||||||||    
T  41223052 aacgagttataacttttttattccaattttaccc-ttatataaaaaa-------aagttgaattctctactcaatccaatcaatatgttgttatttt 41223140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 41809251 - 41809328
Alignment:
Q  127 attcaaattttaccctttatttaaaaaacatcattaggttgaattttcaactcaattcaatcaatatgttgttatttt 204  Q
    |||| |||||||||||||||||||||||| ||| ||  | ||||||||||||||||||||||||||| | ||||||||    
T  41809251 attccaattttaccctttatttaaaaaacgtcaataaatagaattttcaactcaattcaatcaatatttggttatttt 41809328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 80 - 191
Target Start/End: Complemental strand, 31229060 - 31228948
Alignment:
Q  80 tccattgtttgaaaagttgacggaacggaatgagttataannnnnnnattcaaattttaccctttatttaaaaa-acatcattaggttgaattttcaact 178  Q
    ||||||||||| ||||||||||||||||||||||||||||       |||| ||||||||| |||||||||||| |||| | ||  |  |||| ||||||    
T  31229060 tccattgtttggaaagttgacggaacggaatgagttataacatttttattccaattttaccttttatttaaaaagacattaataaatgaaattctcaact 31228961  T
Q  179 caattcaatcaat 191  Q
    |||||||||||||    
T  31228960 caattcaatcaat 31228948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 50859534 - 50859422
Alignment:
Q  9 ggaatggaac--ggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacg 106  Q
    ||||||||||  |||||||| |||| ||| |||| |||||||| |||  |||||||||   ||||||| ||| |||||| |||| ||||| ||||||| |    
T  50859534 ggaatggaacatggaataaagattacattccattgtttggatattttttgacggaatgaaactaatttcccactccattatttggaaagtggacggaatg 50859435  T
Q  107 gaatgagttataa 119  Q
    |||||||||||||    
T  50859434 gaatgagttataa 50859422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 25054871 - 25054800
Alignment:
Q  33 atttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaa 104  Q
    |||||||| ||||| || ||||||| |||||||  | ||||| ||| |||||| ||||||||||||||||||    
T  25054871 atttcattgtttgggtattttacgatggaatggaacaaatttaccactccattttttgaaaagttgacggaa 25054800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 41809180 - 41809235
Alignment:
Q  9 ggaatggaacggaataaaaattatatttcattatttggatactttacgacggaatg 64  Q
    |||||||||||||||||| |||  ||| || ||||||||||||||||||| |||||    
T  41809180 ggaatggaacggaataaagattccattccactatttggatactttacgacagaatg 41809235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 35292762 - 35292672
Alignment:
Q  19 ggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaa 109  Q
    ||||||||||||  ||| |||| |||||||| || | ||||||||||  ||||||| ||| ||||||||||| |||||  || ||||||||    
T  35292762 ggaataaaaatttcattacattgtttggatatttcaagacggaatggaactaatttcccactccattgtttggaaagtgaacagaacggaa 35292672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 41404953 - 41404758
Alignment:
Q  9 ggaatggaacggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacgga 108  Q
    |||||||||||||||||| |||  ||| || | ||||||||||||||||||||||   | |||||| ||||||||||||||| ||| |  ||||||||||    
T  41404953 ggaatggaacggaataaagattccattccactgtttggatactttacgacggaatctagttaatttcccattccattgtttggaaaatcaacggaacgga 41404854  T
Q  109 atgagttataannnnnnnattcaaattttaccctttatttaaaaaacatcattaggttgaattttcaactcaattcaatcaatatgttgttatttt 204  Q
    |||||||||||       |||| |||||||||||||||||||||||  ||| ||  | ||||||||||||||||||||||||||| | ||||||||    
T  41404853 atgagttataaatattttattccaattttaccctttatttaaaaaatgtcaataaatggaattttcaactcaattcaatcaatatttggttatttt 41404758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 15582384 - 15582224
Alignment:
Q  9 ggaatggaacggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacgga 108  Q
    ||||||||||||||||||||||  ||| |||| ||||||||||||| || |||||||  ||||||||||||||||||||||| |||||||||||||| ||    
T  15582384 ggaatggaacggaataaaaattccattccattgtttggatactttatgatggaatggaactaattttccattccattgtttggaaagttgacggaacaga 15582285  T
Q  109 atgagttataannnnnnnattcaaattttaccc--tttatttaaaaaacatcattaggttg 167  Q
    | |||||||||       |||| ||||||||||  ||| ||| |||||||||| |||||||    
T  15582284 aagagttataaaaattttattccaattttacccttttttttttaaaaacatcaataggttg 15582224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 32573833 - 32573637
Alignment:
Q  1 aacggagcggaatggaacggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgac 100  Q
    |||||| |||||||||| |||||||| |||  ||| |||| ||||||||||||| || ||||  |  ||| |||||||||||||||||||||||||| ||    
T  32573833 aacggaacggaatggaatggaataaagattccattccattgtttggatactttatgatggaacagaactagttttccattccattgtttgaaaagttaac 32573734  T
Q  101 ggaacggaatgagttataannnnnnnattcaaattttaccctttatttaaaaaacatcattaggttgaattttcaactcaattcaatcaatatgttgtta 200  Q
     |||||||| |||||||||       |||| ||||||||||||   |||||||        | |||||||| || ||||||| |||||||||||||||||    
T  32573733 agaacggaacgagttataacttttttattccaattttacccttatattaaaaa-------gaagttgaattctctactcaatccaatcaatatgttgtta 32573641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 34970922 - 34970737
Alignment:
Q  20 gaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatgagttataa 119  Q
    ||||||||||   ||| |||| |||||||| |||| ||||||||||  ||||||| ||| ||||||||||| ||||| |||||||||| | | ||||||     
T  34970922 gaataaaaatgtcattccattgtttggatattttatgacggaatggaactaatttcccactccattgtttggaaagtggacggaacgggaagtgttatac 34970823  T
Q  120 nnnnnnnattcaaattttaccctttatttaaaaaacatcattaggttgaattttcaactcaattcaatcaatatgttgttatttttg 206  Q
           |||| | |||||||||||| ||  |||| |||| |  |||||||| ||||||||||||||||||||| | ||||||||||    
T  34970822 cctttttattccatttttaccctttagtt-taaaatatcaatttgttgaattgtcaactcaattcaatcaatatatagttatttttg 34970737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 7521814 - 7521732
Alignment:
Q  37 cattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatgagttataa 119  Q
    |||| |||| ||| |||| || ||||||| ||||||||||||||| |||||||||||||| ||  |||  |||||||||||||    
T  7521814 cattgtttgaatattttatgatggaatggagctaattttccattctattgtttgaaaagtcgagagaattgaatgagttataa 7521732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 49765655 - 49765573
Alignment:
Q  37 cattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatgagttataa 119  Q
    |||| |||| ||| ||||||| ||||||   ||||||| ||| ||||||||||||||||| |||||||||||| | |||||||    
T  49765655 cattgtttgaatattttacgatggaatgaaactaatttcccactccattgtttgaaaagtggacggaacggaaagtgttataa 49765573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 35306269 - 35306311
Alignment:
Q  77 cattccattgtttgaaaagttgacggaacggaatgagttataa 119  Q
    |||||||||||||| ||| ||||||||| ||||||||||||||    
T  35306269 cattccattgtttggaaaattgacggaatggaatgagttataa 35306311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 41419085 - 41419015
Alignment:
Q  135 tttaccctttatttaaaaaaca-tcattaggttgaattttcaactcaattcaatcaatatgttgttatttt 204  Q
    |||||||||||||||||||  | ||| || | |||||| ||||||||||||||||||||||| | ||||||    
T  41419085 tttaccctttatttaaaaaggaatcaatatgctgaattctcaactcaattcaatcaatatgtggatatttt 41419015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 50677493 - 50677562
Alignment:
Q  42 tttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatg 111  Q
    |||||||| ||||||| |||| ||  |||| |||||| || ||||||||| |||||||||||| ||||||    
T  50677493 tttggatattttacgatggaacggaactaactttccactctattgtttgagaagttgacggaatggaatg 50677562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 29465514 - 29465562
Alignment:
Q  71 attttccattccattgtttgaaaagttgacggaacggaatgagttataa 119  Q
    |||||||||||||||||||| |||||||||| || ||||| | ||||||    
T  29465514 attttccattccattgtttggaaagttgacgaaatggaataaattataa 29465562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 32279144 - 32278983
Alignment:
Q  42 tttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatgagttataannnnnnnattcaaattttaccc 141  Q
    |||||||| ||||| ||||||| |  ||||||||||| ||||||||||| |||||  | |||||||||||| ||||||       |||| | ||||||||    
T  32279144 tttggatattttactacggaattgaactaattttccactccattgtttggaaagtgaatggaacggaatgatttataactttttcattccatttttaccc 32279045  T
Q  142 tttatttaaaaaacatcattaggttgaattttcaactcaattcaatcaatatgttgttatttt 204  Q
    |||| ||||||| ||||| || |||||||| |||||||||||||||||||| || ||||||||    
T  32279044 tttacttaaaaa-catcactatgttgaattctcaactcaattcaatcaataagtagttatttt 32278983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 44714108 - 44713946
Alignment:
Q  42 tttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatgagttataannnnnnnattcaaattttaccc 141  Q
    |||||||| ||||||| |||||||  |||||||| ||||| ||||||||  || |  |||||||||||||| ||||||       |||| ||||||||||    
T  44714108 tttggatattttacgatggaatggaactaatttttcattctattgtttggcaaatgaacggaacggaatgaattataatttttttattccaattttaccc 44714009  T
Q  142 tttatttaaaaaacatcattaggttgaattttcaactcaattcaatcaatatgttgttatttt 204  Q
    |||| |||||||||||||  |||||||||| |||||||||| ||||| ||||||  |||||||    
T  44714008 tttagttaaaaaacatcaagaggttgaattctcaactcaatccaatccatatgtgcttatttt 44713946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 25046158 - 25045997
Alignment:
Q  42 tttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatgagttataannnnnnnattcaaattttaccc 141  Q
    |||||||| ||||| ||||||| |  ||||||||||| ||||||||||  |||||  | |||||||||||| ||||||       |||| | ||||||||    
T  25046158 tttggatattttactacggaattgaactaattttccactccattgtttagaaagtgaatggaacggaatgatttataacttttttattccatttttaccc 25046059  T
Q  142 tttatttaaaaaacatcattaggttgaattttcaactcaattcaatcaatatgttgttatttt 204  Q
    |||| ||||||| ||||| || |||||||| |||||||||||||||||||| || ||||||||    
T  25046058 tttacttaaaaa-catcactatgttgaattctcaactcaattcaatcaatacgtagttatttt 25045997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 39439279 - 39439369
Alignment:
Q  19 ggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaa 109  Q
    ||||||||||||  ||| |||| |||||||| || | |||||||||   ||||||| ||| |||||||||||||||||  |||||||||||    
T  39439279 ggaataaaaatttcattccattgtttggatatttcaagacggaatgaaactaatttcccactccattgtttgaaaagtgaacggaacggaa 39439369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 2144593 - 2144641
Alignment:
Q  71 attttccattccattgtttgaaaagttgacggaacggaatgagttataa 119  Q
    |||||||||||||||||||| ||||||||||||| ||||| | ||||||    
T  2144593 attttccattccattgtttggaaagttgacggaatggaataaattataa 2144641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 27012005 - 27011861
Alignment:
Q  9 ggaatggaacggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacgga 108  Q
    |||| |||| |||||| | |||| ||| ||| ||||||||| || |||| |||| || ||||| |||||  ||||||||||| |||||||||| || |||    
T  27012005 ggaacggaatggaatagagattacattccatcatttggatatttcacgatggaagggagctaactttccgctccattgtttggaaagttgacgaaatgga 27011906  T
Q  109 atgagttataannnnnnnattcaaattttaccctttatttaaaaaa 154  Q
    |||  ||||||       |||| ||||||| |||||||||||||||    
T  27011905 atgtattataa-ttttttattccaattttaacctttatttaaaaaa 27011861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 35231285 - 35231327
Alignment:
Q  77 cattccattgtttgaaaagttgacggaacggaatgagttataa 119  Q
    |||||||||||||| ||| ||||||||| ||||||||||||||    
T  35231285 cattccattgtttggaaaattgacggaatggaatgagttataa 35231327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 42028651 - 42028733
Alignment:
Q  37 cattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatgagttataa 119  Q
    |||| |||||||| | |||| ||||||||  ||||||| ||| ||||||||||| ||||| ||||||| | ||| ||||||||    
T  42028651 cattgtttggatattatacggcggaatggaactaatttcccactccattgtttggaaagtggacggaatgaaattagttataa 42028733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 40022901 - 40023046
Alignment:
Q  8 cggaatggaacggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacgg 107  Q
    ||||||||||||||||||  |||  ||| |||| || ||||| |||||||  ||| ||  |||||||| ||||||| | ||| |||||| ||||||||      
T  40022901 cggaatggaacggaataatgattccattgcattgtt-ggatattttacgatagaacggaactaatttttcattccactatttaaaaagtggacggaacat 40022999  T
Q  108 aatgagttataannnnnnnattcaaattttaccctttatttaaaaaa 154  Q
    ||||||||||||       |||| |||||||||||||  ||||||||    
T  40023000 aatgagttataatttttttattctaattttacccttttgttaaaaaa 40023046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 28198557 - 28198718
Alignment:
Q  42 tttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatgagttataannnnnnnattcaaattttaccc 141  Q
    |||||||| ||||| |||||||||  ||||||||||| | ||||||||| |||||  | |||||||||||| ||||||       |||| | ||||||||    
T  28198557 tttggatattttactacggaatggaactaattttccacttcattgtttggaaagtgaatggaacggaatgatttataacttttttattccatttttaccc 28198656  T
Q  142 tttatttaaaaaacatcattaggttgaattttcaactcaattcaatcaatatgttgttatttt 204  Q
    |||| ||||||| ||||| || |||||||| |||||||||||||||||||| || ||||||||    
T  28198657 tttacttaaaaa-catcactatgttgaattctcaactcaattcaatcaatacgtagttatttt 28198718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 22017695 - 22017871
Alignment:
Q  14 ggaacggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatgag 113  Q
    ||||| ||||||| |||  ||| |||| || ||||||||||| | ||||||   |||||||| |||||||||||| | ||| |||||||||||||||||     
T  22017695 ggaacagaataaagattccattccattgttcggatactttacaatggaatgcaactaatttttcattccattgttaggaaaattgacggaacggaatgaa 22017794  T
Q  114 ttataannnnnnnattcaaattttaccctttatttaaaaaacatcattaggttgaattttcaactcaattcaatcaa 190  Q
    ||||||       ||||| |||||||||||||||| ||||| |||| || ||| |||| | |||||||||| |||||    
T  22017795 ttataatttttttattcatattttaccctttatttgaaaaatatcaataagtttaattcttaactcaattctatcaa 22017871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 17998987 - 17999081
Alignment:
Q  13 tggaacggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacgg 107  Q
    ||||| ||||||||||||| |||  ||| |||||||| |||| ||||||||||  ||||||| ||||||||||||||||||||| ||||||||||    
T  17998987 tggaatggaataaaaattacattctattgtttggatattttatgacggaatggaactaatttcccattccattgtttgaaaagtggacggaacgg 17999081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 68 - 193
Target Start/End: Complemental strand, 23701708 - 23701583
Alignment:
Q  68 ctaattttccattccattgtttgaaaagttgacggaacggaatgagttataannnnnnnattcaaattttaccctttattt-aaaaaacatcattaggtt 166  Q
    ||||||||||||||||||||||| |||||||| | || ||||||||||||||       |||| ||||||  ||||||||| ||||||||||| || |||    
T  23701708 ctaattttccattccattgtttggaaagttgatgaaatggaatgagttataa-ctttttattccaattttgacctttatttaaaaaaacatcaatatgtt 23701610  T
Q  167 gaattttcaactcaattcaatcaatat 193  Q
    ||||| ||||||||||| |||||||||    
T  23701609 gaattctcaactcaattaaatcaatat 23701583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 12432857 - 12432905
Alignment:
Q  71 attttccattccattgtttgaaaagttgacggaacggaatgagttataa 119  Q
    |||||||||||||||||||| ||||||||||||| ||||| | ||||||    
T  12432857 attttccattccattgtttggaaagttgacggaatggaataaattataa 12432905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 10354968 - 10354878
Alignment:
Q  19 ggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaa 109  Q
    ||||||||||||  ||| |||| |||||||| || | ||||||||||  ||||||| ||| ||||||||||| || ||  |||||||||||    
T  10354968 ggaataaaaatttcattccattgtttggatatttcaagacggaatggaactaatttcccactccattgtttggaaggtgaacggaacggaa 10354878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 28219787 - 28219705
Alignment:
Q  37 cattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatgagttataa 119  Q
    |||| |||||||| | |||| ||||||||  ||||||| ||| ||||||||||| ||||| ||||||| | ||| ||||||||    
T  28219787 cattgtttggatattatacggcggaatggaactaatttcccactccattgtttggaaagtggacggaatgaaattagttataa 28219705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 19626201 - 19626041
Alignment:
Q  42 tttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatgagttataannnnnnnattcaaattttaccc 141  Q
    |||||||| ||||| |||||||||  ||||||||||| || |||||||| |||||  | |||||||||||| ||||||       |||| | ||||||||    
T  19626201 tttggatattttactacggaatggaactaattttccactcaattgtttggaaagtgaatggaacggaatgatttataatttttttattccatttttaccc 19626102  T
Q  142 tttatttaaaaaacatcattaggttgaattttcaactcaattcaatcaatatgttgttatttt 204  Q
    |||| || |||||||||| |  |||||||| ||||||||||||||||||||||| ||||||||    
T  19626101 tttactt-aaaaacatcact-tgttgaattctcaactcaattcaatcaatatgtagttatttt 19626041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 19848563 - 19848458
Alignment:
Q  1 aacggagcggaatggaacggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgac 100  Q
    |||||| |||||||||| |||||||| |||  ||| |||| ||||||||||||| || |||| ||  ||| ||||||||||||||||||| |||||| ||    
T  19848563 aacggaacggaatggaatggaataaagattccattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagttaac 19848464  T
Q  101 ggaacg 106  Q
    ||||||    
T  19848463 ggaacg 19848458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 12634122 - 12634007
Alignment:
Q  77 cattccattgtttgaaaagttgacggaacggaatgagttataannnnnnnattcaaattttaccctttattt-aaaaaacatcattaggttgaattttca 175  Q
    |||||||||||||| ||||| ||||||||||||||| ||||||       |||| |||| |||||||||||| ||||||||| | |||||  |||| | |    
T  12634122 cattccattgtttggaaagtcgacggaacggaatgaattataacatttttattccaattataccctttatttaaaaaaacattaataggtgaaattctta 12634023  T
Q  176 actcaattcaatcaat 191  Q
    ||||||||||||||||    
T  12634022 actcaattcaatcaat 12634007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 28300772 - 28300820
Alignment:
Q  71 attttccattccattgtttgaaaagttgacggaacggaatgagttataa 119  Q
    |||||||||||||||||||| ||||||||||||| ||||| | ||||||    
T  28300772 attttccattccattgtttggaaagttgacggaatggaataaattataa 28300820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 36656808 - 36656919
Alignment:
Q  8 cggaatggaacggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacgg 107  Q
    |||||||||| |||| |||||||| ||| ||||  ||||||| |||| ||||||||||  |||| |||||  ||||||||||| |  ||  |||||||||    
T  36656808 cggaatggaatggaacaaaaattacattccattgcttggatattttatgacggaatggaactaactttccgctccattgtttggatcgtgaacggaacgg 36656907  T
Q  108 aatgagttataa 119  Q
    || | |||||||    
T  36656908 aacgtgttataa 36656919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 3215343 - 3215383
Alignment:
Q  164 gttgaattttcaactcaattcaatcaatatgttgttatttt 204  Q
    |||||||| ||||||||||||||||||||| | ||||||||    
T  3215343 gttgaattgtcaactcaattcaatcaatatatagttatttt 3215383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 19848412 - 19848372
Alignment:
Q  164 gttgaattttcaactcaattcaatcaatatgttgttatttt 204  Q
    |||||||| || ||||||| |||||||||||||||||||||    
T  19848412 gttgaattctctactcaatccaatcaatatgttgttatttt 19848372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 57757 - 57646
Alignment:
Q  8 cggaatggaacggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacgg 107  Q
    |||||| ||| |||||||| |||  ||| |||| ||||||||||||| || |||| ||  ||| ||||||||||||||||||| |||||| |||||||||    
T  57757 cggaattgaatggaataaagatttcattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagttaacggaacgg 57658  T
Q  108 aatgagttataa 119  Q
    || |||||||||    
T  57657 aacgagttataa 57646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 57608 - 57568
Alignment:
Q  164 gttgaattttcaactcaattcaatcaatatgttgttatttt 204  Q
    |||||||| || ||||||| |||||||||||||||||||||    
T  57608 gttgaattctctactcaatccaatcaatatgttgttatttt 57568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 34924031 - 34924218
Alignment:
Q  10 gaatggaacggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaa 109  Q
    |||| ||| |||||||| |||  ||| |||| ||||||||||||| || |||| |   ||| ||||||||||||||||||| |||||| |||||||||||    
T  34924031 gaattgaatggaataaagatttcattccattgtttggatactttatgatggaacgaaactagttttccattccattgtttggaaagttaacggaacggaa 34924130  T
Q  110 tgagttataannnnnnnattcaaattttaccctt-tatttaaaaaacatcattaggttgaattttcaactcaattcaatcaatatgttgttatttt 204  Q
     |||||||||       |||| |||||||||||| |||||||||         | |||||||| || ||||||| |||||||||||||||||||||    
T  34924131 cgagttataacttttttattccaattttacccttatatttaaaa--------gaagttgaattctctactcaatccaatcaatatgttgttatttt 34924218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 29845066 - 29844962
Alignment:
Q  1 aacggagcggaatggaacggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgac 100  Q
    |||||| ||||||||||||||||||| ||   ||| || | |||||||| || | ||||||||||  ||||||| |||||||||||||||| |||| ||     
T  29845066 aacggaacggaatggaacggaataaagatatcattccactgtttggatatttaatgacggaatggaactaatttcccattccattgtttgagaagtcgat 29844967  T
Q  101 ggaac 105  Q
    |||||    
T  29844966 ggaac 29844962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 14111686 - 14111811
Alignment:
Q  72 ttttccattccattgtttgaaaagttgacggaacggaatgagttataannnnnnnattcaaattttaccctttatttaaaaaacatcattaggttgaatt 171  Q
    ||||||||||||||||||| ||||||  |||||||||| |||||||||       |||| ||||||||||||   |||||||        | ||||||||    
T  14111686 ttttccattccattgtttggaaagttagcggaacggaacgagttataacttttttattccaattttacccttatattaaaaa-------gaagttgaatt 14111778  T
Q  172 ttcaactcaattcaatcaatatgttgttatttt 204  Q
     || ||||||| |||||||||||||||||||||    
T  14111779 ctctactcaatccaatcaatatgttgttatttt 14111811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 31904440 - 31904468
Alignment:
Q  176 actcaattcaatcaatatgttgttatttt 204  Q
    |||||||||||||||||||||||||||||    
T  31904440 actcaattcaatcaatatgttgttatttt 31904468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 37 - 154
Target Start/End: Original strand, 43501 - 43618
Alignment:
Q  37 cattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatgagttataannnnnnnattcaaattt 136  Q
    |||| |||||||| ||||||||||||||   |||||||  |||||||||||||| ||||| ||| ||||||||||||||||||       |||  |||||    
T  43501 cattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacagaacggaatgagttataacttttttatttcaattt 43600  T
Q  137 taccctttatttaaaaaa 154  Q
    |||||||||||| |||||    
T  43601 taccctttattttaaaaa 43618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 37 - 154
Target Start/End: Original strand, 77221 - 77338
Alignment:
Q  37 cattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatgagttataannnnnnnattcaaattt 136  Q
    |||| |||||||| ||||||||||||||   |||||||  |||||||||||||| ||||| ||| ||||||||||||||||||       |||  |||||    
T  77221 cattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacagaacggaatgagttataacttttttatttcaattt 77320  T
Q  137 taccctttatttaaaaaa 154  Q
    |||||||||||| |||||    
T  77321 taccctttattttaaaaa 77338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 29644726 - 29644639
Alignment:
Q  32 tatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaacggaatgagttataa 119  Q
    |||||||||||||||||| |||| ||  |||||   |||||||| ||||||||| |||||||||| |||||| | | |||||||||||    
T  29644726 tatttcattatttggatattttatgagagaatgaaactaatttttcattccattatttgaaaagtagacggagcaggatgagttataa 29644639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 10144831 - 10144783
Alignment:
Q  71 attttccattccattgtttgaaaagttgacggaacggaatgagttataa 119  Q
    ||||||||||||||| |||| ||||||||||||| ||||| | ||||||    
T  10144831 attttccattccattatttggaaagttgacggaatggaataaattataa 10144783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 8538 - 8651
Alignment:
Q  5 gagcggaatggaacggaataaaaattatatttcattatttggatactttacgacggaatggggctaattttccattccattgtttgaaaagttgacggaa 104  Q
    |||||||||||||| ||||||| ||   ||| || | |||||||| || | ||||||||||  |||||||  ||||||||||||| | |||||||  |||    
T  8538 gagcggaatggaacagaataaagataccattccact-tttggatatttaatgacggaatggaactaatttctcattccattgtttaagaagttgatagaa 8636  T
Q  105 cggaatgagttataa 119  Q
    | |||||||||||||    
T  8637 cagaatgagttataa 8651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 29540 - 29577
Alignment:
Q  167 gaattttcaactcaattcaatcaatatgttgttatttt 204  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  29540 gaattttcaactcaattcaatcaatatttggttatttt 29577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 12150 - 12198
Alignment:
Q  71 attttccattccattgtttgaaaagttgacggaacggaatgagttataa 119  Q
    ||||||||||||||| |||| ||||||||||||| ||||| | ||||||    
T  12150 attttccattccattatttggaaagttgacggaatggaataaattataa 12198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University