View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_low_56 (Length: 206)
Name: NF13262_low_56
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 54643863 - 54643692
Alignment:
| Q |
17 |
cacagacagagtttaaaatgtgaaacttttcttttcaatcatgattaatgttgtatctatctacttctatatacatttgtctcaacatacccctggcagt |
116 |
Q |
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| T |
54643863 |
cacagacagagtataaattgtgaaacttttcttttcaatcatgattaatgttgtatctatctacttctatatacatttgtctcaacatacccctggcagt |
54643764 |
T |
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| Q |
117 |
tccttgattcaaagcatttcctagagtaagtattgtttgcataattctcttcaatttgacagaattcctgat |
188 |
Q |
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| T |
54643763 |
tccttgattcaaagcatttcctagagtaagtattgtttgcataattctcttcaatttgacagaattcctgat |
54643692 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 3242408 - 3242335
Alignment:
| Q |
112 |
gcagttccttgattcaaagcatttcctagagtaagtattgtttgcataattctcttcaatttgacagaattcct |
185 |
Q |
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|||||||| |||||||||||||| || |||| ||| || || ||||| ||||| ||||||||||| |||||||| |
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| T |
3242408 |
gcagttccatgattcaaagcattgccaagagaaagaatggtctgcatgattcttttcaatttgaccgaattcct |
3242335 |
T |
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