View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_low_57 (Length: 203)
Name: NF13262_low_57
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 27959431 - 27959262
Alignment:
| Q |
17 |
tagggcaaatgaagggtccaacaacaaaacttggtacaagtgtcacaatatccaacccatgttgttctccaaattctagaacagctttctcagctagggt |
116 |
Q |
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| T |
27959431 |
tagggcaaataaagggtccaacaacaaaacttggtacaagagttacaatatccaaaccatgttgttctccaaattcaagaacagctttctcagctagggt |
27959332 |
T |
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| Q |
117 |
tttagaaacagcatatgaccaagcaaaaggcttcaaatttctaagaatattcacatcactccaataactt |
186 |
Q |
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| T |
27959331 |
tttagaaacagcatatgaccaagcaaaaggcttcaaatttctaagaatattcacatcactccaataactt |
27959262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 27985745 - 27985570
Alignment:
| Q |
11 |
gtagcatagggcaaatgaagggtccaacaacaaaacttggtacaagtgtcacaatatccaacccatgttgttctccaaattctagaacagctttctcagc |
110 |
Q |
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| T |
27985745 |
gtagcttaggacaaatgaaaggtccaacaacaaaagtgggtagaagagtcacaatatccaaaccatgttgttctccaaattcaagaacagctttctcagc |
27985646 |
T |
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| Q |
111 |
tagggttttagaaacagcatatgaccaagcaaaaggcttcaaatttctaagaatattcacatcactccaataactt |
186 |
Q |
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| T |
27985645 |
tagggttttagaaacagcatatgaccaagcaaaaggtttcaaagttctaagattattcacatcactccaataactt |
27985570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 27994927 - 27994752
Alignment:
| Q |
11 |
gtagcatagggcaaatgaagggtccaacaacaaaacttggtacaagtgtcacaatatccaacccatgttgttctccaaattctagaacagctttctcagc |
110 |
Q |
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| T |
27994927 |
gtagcttaggacaaatgaaaggtcctacaacaaaaggtggtacaagagtcacaatatccaacccatgttgttctccaaattcaagaacagctttctcagc |
27994828 |
T |
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| Q |
111 |
tagggttttagaaacagcatatgaccaagcaaaaggcttcaaatttctaagaatattcacatcactccaataactt |
186 |
Q |
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| T |
27994827 |
tagtgtcttagaaacaccatatgaccaagcaaatggcttcaaagttctaagaatattcacatcactccaataactt |
27994752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 28013594 - 28013431
Alignment:
| Q |
22 |
caaatgaagggtccaacaacaaaacttggtacaagtgtcacaatatccaacccatgttgttctccaaattctagaacagctttctcagctagggttttag |
121 |
Q |
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| T |
28013594 |
caaatgaatggtccaagaacaaaagttggtattatagtcacaacatctaaaccatgttgttctccaaattcaagaacagctttctctgccatagttttag |
28013495 |
T |
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| Q |
122 |
aaacagcatatgaccaagcaaaaggcttcaaatttctaagaatattcacatcactccaataact |
185 |
Q |
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| T |
28013494 |
aaattgaatatgaccaagcaaatggtttcaaatctctaagaagattttcatcactccaataact |
28013431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 28005660 - 28005492
Alignment:
| Q |
17 |
tagggcaaatgaagggtccaacaacaaaacttggtacaagtgtcacaatatccaacccatgttgttctccaaattctagaacagctttctcagctagggt |
116 |
Q |
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|||| |||||||||| ||||||||| ||| |||||| | ||||||| ||| || ||| ||||||||||||| ||||||||| | ||||| || | || |
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| T |
28005660 |
taggacaaatgaaggatccaacaactaaagttggtattatagtcacaacatctaaaccaagttgttctccaaactctagaacaaccttctctgccattgt |
28005561 |
T |
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| Q |
117 |
tttagaaacagcatatgaccaagcaaaaggcttcaaatttctaagaatattcacatcactccaataact |
185 |
Q |
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|||||||| | ||| |||||| |||| || ||||||| |||||||||||| |||||||||||||||| |
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| T |
28005560 |
tttagaaattgaatacgaccaaccaaatggtttcaaatctctaagaatattttcatcactccaataact |
28005492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 27944826 - 27944768
Alignment:
| Q |
73 |
ccatgttgttctccaaattctagaacagctttctcagctagggttttagaaacagcata |
131 |
Q |
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|||| |||||| |||||||| ||||||||||||||||| | || |||||||||||||| |
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| T |
27944826 |
ccattttgttcaccaaattcaagaacagctttctcagccaatgtcttagaaacagcata |
27944768 |
T |
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