View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13262_low_6 (Length: 546)

Name: NF13262_low_6
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13262_low_6
NF13262_low_6
[»] chr4 (18 HSPs)
chr4 (5-533)||(4335417-4335945)
chr4 (14-326)||(4361380-4361695)
chr4 (41-343)||(4123429-4123734)
chr4 (14-343)||(4344932-4345264)
chr4 (339-535)||(4123754-4123950)
chr4 (41-343)||(4320118-4320417)
chr4 (344-533)||(4344718-4344907)
chr4 (375-535)||(4320473-4320630)
chr4 (359-533)||(4361149-4361323)
chr4 (397-533)||(6498399-6498535)
chr4 (415-533)||(6753032-6753150)
chr4 (397-533)||(6545321-6545457)
chr4 (397-524)||(6588069-6588196)
chr4 (436-533)||(6621419-6621516)
chr4 (397-533)||(6728478-6728614)
chr4 (485-527)||(4133386-4133428)
chr4 (397-533)||(6651139-6651275)
chr4 (397-533)||(6815542-6815678)
[»] chr6 (23 HSPs)
chr6 (399-515)||(5066569-5066685)
chr6 (399-527)||(5073783-5073911)
chr6 (399-527)||(5102489-5102617)
chr6 (399-515)||(5157503-5157619)
chr6 (404-527)||(5344939-5345062)
chr6 (404-525)||(5243793-5243914)
chr6 (393-533)||(5096780-5096920)
chr6 (399-527)||(5181802-5181930)
chr6 (399-527)||(5354489-5354617)
chr6 (404-527)||(5176817-5176940)
chr6 (402-515)||(5128295-5128408)
chr6 (399-515)||(5426000-5426116)
chr6 (404-527)||(5278644-5278767)
chr6 (404-533)||(5690039-5690168)
chr6 (438-515)||(5350484-5350561)
chr6 (402-515)||(5370661-5370774)
chr6 (399-527)||(5447665-5447793)
chr6 (399-497)||(5434143-5434241)
chr6 (404-495)||(5397060-5397151)
chr6 (414-527)||(5383404-5383517)
chr6 (399-527)||(5284264-5284392)
chr6 (239-314)||(5181633-5181708)
chr6 (191-255)||(5397324-5397388)
[»] chr5 (5 HSPs)
chr5 (399-512)||(8877702-8877815)
chr5 (414-535)||(20838702-20838823)
chr5 (414-494)||(12599062-12599142)
chr5 (414-535)||(20812347-20812468)
chr5 (415-497)||(15803019-15803101)
[»] chr7 (2 HSPs)
chr7 (402-527)||(36213707-36213832)
chr7 (414-526)||(18935465-18935577)
[»] scaffold0294 (1 HSPs)
scaffold0294 (399-526)||(8775-8902)
[»] chr3 (5 HSPs)
chr3 (399-464)||(47986747-47986812)
chr3 (399-464)||(47996034-47996099)
chr3 (399-464)||(48005321-48005386)
chr3 (399-464)||(48014606-48014671)
chr3 (404-497)||(6905806-6905899)
[»] chr8 (7 HSPs)
chr8 (414-518)||(3262637-3262740)
chr8 (414-535)||(31175917-31176038)
chr8 (404-470)||(3407323-3407389)
chr8 (404-497)||(3391536-3391629)
chr8 (414-497)||(3314966-3315049)
chr8 (415-497)||(3364277-3364359)
chr8 (414-495)||(3325010-3325091)
[»] scaffold0286 (1 HSPs)
scaffold0286 (436-533)||(6731-6828)
[»] scaffold0813 (1 HSPs)
scaffold0813 (397-533)||(4699-4835)


Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 5 - 533
Target Start/End: Complemental strand, 4335945 - 4335417
Alignment:
Q  5 atatataactataactattagacaaatgcaaaagaaagagtgaaacctgtaagatcctctctttgagaatattggagattaggcaactcgttcccagttg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4335945 atatataactataactattagacaaatgcaaaagaaagagtgaaacctgtaagatcctctctttgagaatattggagattaggcaactcgttcccatttg 4335846  T
Q  105 aatcagaagagatttcatgcaattttttgctggtgaatcttgcacttgactgcgacattcaattagtgaagtcttcacatctaatacttgtgatgtagtt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4335845 aatcagaagagatttcatgcaattttttgctggtgaatcttgcacttgactgcgacattcaattagtgaagtcttcacatctgatacttgtgatgtagtt 4335746  T
Q  205 gcagttgatttcaattccttagaatttgctgcacataatgcattcaaaattcttgttgtgtcttgtgaaagttgaagttctgattcacactcaaaccaaa 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4335745 gcagttgatttcaattccttagaatttgctgcacataatgcattcaaaattcttgttgtgtcttgtgaaagttgaagttctgatccacactcaaaccaaa 4335646  T
Q  305 ggcattgaagtttaggaaggactttgaaaacagatgatacattcaaagaaatatgggatgacattccaacagctgtttgaacagcgggtgagacattatt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  4335645 ggcattgaagtttaggaaggactttgaaaacagatgatacattcaaagaaacatggggtgacattccaacagctgtttgaacagctggtgagacattatt 4335546  T
Q  405 tgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttact 504  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4335545 tgttggtaccatccaagaccaaattatagaaggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttact 4335446  T
Q  505 actgaaaagggcacttttgttataccagt 533  Q
    |||||||||||||||||||||||||||||    
T  4335445 actgaaaagggcacttttgttataccagt 4335417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 14 - 326
Target Start/End: Complemental strand, 4361695 - 4361380
Alignment:
Q  14 tataactattagacaaatgcaaaagaaagagtgaaacctgtaagatcctctctttgagaatattggagattaggcaactcgttcccagttgaatcagaag 113  Q
    ||||||||||| ||| |||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  4361695 tataactattaaacacatgcaagagagagggtgaaacctgtaagatcctctctttgagaatattggagattaggcaactcgttcccatctgaattagaag 4361596  T
Q  114 agatttcatgcaattttttgctggtgaatcttgcacttgactgcgacattcaattagt---gaagtcttcacatctaatacttgtgatgtagttgcagtt 210  Q
    |||||||||| ||||||||| || ||||||| ||| ||||   | ||||||||||| |   ||||||||||| ||| |||||||||||||||||||||||    
T  4361595 agatttcatgtaattttttgttgctgaatctggcatttgatcacaacattcaattaatgaagaagtcttcacctctgatacttgtgatgtagttgcagtt 4361496  T
Q  211 gatttcaattccttagaatttgctgcacataatgcattcaaaattcttgttgtgtcttgtgaaagttgaagttctgattcacactcaaaccaaaggcatt 310  Q
    |||| ||||||||| ||||||| ||||| ||| |||||||||||| ||| |||||| ||||||||||||||||||||| |||| || | |||||||| ||    
T  4361495 gattccaattccttggaatttgttgcacttaaagcattcaaaattattgctgtgtcctgtgaaagttgaagttctgatccacattccagccaaaggcttt 4361396  T
Q  311 gaagtttaggaaggac 326  Q
    |||| || ||||||||    
T  4361395 gaagcttcggaaggac 4361380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 41 - 343
Target Start/End: Original strand, 4123429 - 4123734
Alignment:
Q  41 agagtgaaacctgtaagatcctctctttgagaatattggagattaggcaactcgttcccagttgaatcagaagagatttcatgcaattttttgctggtga 140  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| || |||    
T  4123429 agagcgaaacctgtaagatcctctctttgagaatattggagattaggcaactcgttcccatttgaattagaagagatttcatgcaattttttgttgctga 4123528  T
Q  141 atcttgcacttgactgcgacattcaattagtg---aagtcttcacatctaatacttgtgatgtagttgcagttgatttcaattccttagaatttgctgca 237  Q
    |||||||| ||||   | |||||| |||| ||   ||||||||||||   |||||||||| ||||||||| |||||| |||| |||| ||||||| || |    
T  4123529 atcttgcatttgatcacaacattccattaatgaacaagtcttcacattggatacttgtgacgtagttgcaattgattccaatcccttggaatttgttgaa 4123628  T
Q  238 cataatgcattcaaaattcttgttgtgtcttgtgaaagttgaagttctgattcacactcaaaccaaaggcattgaagtttaggaaggactttgaaaacag 337  Q
    | ||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||| ||||||||  |||||| ||    
T  4123629 cttaaagcattcaaaattcttgttgtgtcctgtgaaagttgaagttctgatccacactccaaccaaaggcactgaagttttggaaggacactgaaaatag 4123728  T
Q  338 atgata 343  Q
    | ||||    
T  4123729 acgata 4123734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 14 - 343
Target Start/End: Complemental strand, 4345264 - 4344932
Alignment:
Q  14 tataactattagacaaatgcaaaagaaagagtgaaacctgtaagatcctctctttgagaatattggagattaggcaactcgttcccagttgaatcagaag 113  Q
    ||||||||| ||||| |||||| ||| |||| ||||||||||||||  |||||||||||||||||||||||||||||||| ||||||  ||||| | |||    
T  4345264 tataactatcagacacatgcaagagagagagcgaaacctgtaagataatctctttgagaatattggagattaggcaactcattcccatctgaattaaaag 4345165  T
Q  114 agatttcatgcaattttttgctggtgaatcttgcacttgactgcgacattcaattagtgaa---gtcttcacatctaatacttgtgatgtagttgcagtt 210  Q
    ||||| || | |||||| || || || ||||||||||||||  ||||||||||||| ||||   |||||||||||| | ||||| |||||||||||||||    
T  4345164 agattccaaggaattttgtgttgttgtatcttgcacttgaccacgacattcaattaatgaagtcgtcttcacatctgacacttgggatgtagttgcagtt 4345065  T
Q  211 gatttcaattccttagaatttgctgcacataatgcattcaaaattcttgttgtgtcttgtgaaagttgaagttctgattcacactcaaaccaaaggcatt 310  Q
    |||| ||||||| ||||| ||| ||||| ||| |||| |||||| |||||||  |||||||| ||||||||||||||| |||| || | |||||| | ||    
T  4345064 gattccaattccgtagaacttgttgcacttaaggcatgcaaaatacttgttgcatcttgtgatagttgaagttctgatccacattcgagccaaagacttt 4344965  T
Q  311 gaagtttaggaaggactttgaaaacagatgata 343  Q
    |||| || |||| ||| ||| ||| ||||||||    
T  4344964 gaagcttcggaaagacattggaaatagatgata 4344932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 339 - 535
Target Start/End: Original strand, 4123754 - 4123950
Alignment:
Q  339 tgatacattcaaagaaatatgggatgacattccaacagctgtttgaacagcgggtgagacattatttgttggtaccatccaagaccaaatgatagacgga 438  Q
    |||| ||| |||||||| | ||||||||||||| |||||||||||||||||||||| || |||||||||||||| |||||||||| |||||||||| |||    
T  4123754 tgatgcatgcaaagaaacaagggatgacattccgacagctgtttgaacagcgggtgggagattatttgttggtaacatccaagacgaaatgatagaagga 4123853  T
Q  439 aacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaagggcacttttgttataccagtat 535  Q
    ||||||||||| |||||||||||||| ||||||| ||| ||| | ||||||||||||||| ||||||| ||||||||||||||||||||| ||||||    
T  4123854 aacacatcacgagagaatccttcatatccacacagagaaataaatccaatgctttttgaccttactaccgaaaagggcacttttgttatagcagtat 4123950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 41 - 343
Target Start/End: Original strand, 4320118 - 4320417
Alignment:
Q  41 agagtgaaacctgtaagatcctctctttgagaatattggagattaggcaactcgttcccagttgaatcagaagagatttcatgcaattttttgctggtga 140  Q
    |||||||||||| ||||||||||||||| |||||||||| ||||||| |  || |||||| |||||  | ||||||||||||| |||||   |  | |||    
T  4320118 agagtgaaacctttaagatcctctctttcagaatattggtgattagggagttcattcccatttgaaataaaagagatttcatggaatttggagtggttga 4320217  T
Q  141 atcttgcacttgactgcgacattcaattagtgaagtcttcacatctaatacttgtgatgtagttgcagttgatttcaattccttagaatttgctgcacat 240  Q
    | ||| ||||||||||||||||||||||| ||||   |||||||||  |||||||||||||||||||||||||| ||||||| ||||| ||||| ||| |    
T  4320218 aactttcacttgactgcgacattcaattaatgaa---ttcacatctggtacttgtgatgtagttgcagttgattccaattccatagaacttgctacactt 4320314  T
Q  241 aatgcattcaaaattcttgttgtgtcttgtgaaagttgaagttctgattcacactcaaaccaaaggcattgaagtttaggaaggactttgaaaacagatg 340  Q
    || ||||||| ||||| |||||  |||||||| ||||||||||||||| ||||    | |||||||| |||||| || ||||||||  || ||| |||||    
T  4320315 aaagcattcacaattcgtgttgcatcttgtgatagttgaagttctgatccacatgtcagccaaaggctttgaagctttggaaggacaatggaaatagatg 4320414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 344 - 533
Target Start/End: Complemental strand, 4344907 - 4344718
Alignment:
Q  344 cattcaaagaaatatgggatgacattccaacagctgtttgaacagcgggtgagacattatttgttggtaccatccaagaccaaatgatagacggaaacac 443  Q
    |||| ||||||| | | |||||||| ||| ||| |||||||| || ||| |||| |  ||||||||||  ||||||||||||||||||||| ||||||||    
T  4344907 catttaaagaaacaagcgatgacatcccagcagttgtttgaaaagtgggcgagagaccatttgttggtgacatccaagaccaaatgatagaaggaaacac 4344808  T
Q  444 atcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaagggcacttttgttataccagt 533  Q
    |||||| |||||||||||||| ||||||||||| ||| | ||||||| ||||||| |||||||||||||||| |||||||||||| ||||    
T  4344807 atcacgtgagaatccttcatatccacacaaagaaataaatccaatgcgttttgaccttactactgaaaagggtacttttgttatagcagt 4344718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 375 - 535
Target Start/End: Original strand, 4320473 - 4320630
Alignment:
Q  375 agctgtttgaacagcgggtgagacattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaa 474  Q
    ||||||||||| ||||||||| | |||||||| ||    ||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| |    
T  4320473 agctgtttgaaaagcgggtgacagattatttggtga---catccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacaga 4320569  T
Q  475 gagatatagccaatgctttttgactttactactgaaaagggcacttttgttataccagtat 535  Q
    || ||| | ||||||||||||||| |||||| ||||||||| |||||||||||||||||||    
T  4320570 gaaataaatccaatgctttttgaccttactaatgaaaagggaacttttgttataccagtat 4320630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 359 - 533
Target Start/End: Complemental strand, 4361323 - 4361149
Alignment:
Q  359 gggatgacattccaacagctgtttgaacagcgggtgagacattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatcc 458  Q
    |||||||||| ||| ||| |||||||| || ||| |||| |  ||||||||||  |||||||||| |||||||||| |||||||||||||| ||||||||    
T  4361323 gggatgacatcccagcagttgtttgaaaagtgggcgagagaccatttgttggtgacatccaagacgaaatgatagaaggaaacacatcacgtgagaatcc 4361224  T
Q  459 ttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaagggcacttttgttataccagt 533  Q
    |||||| ||||||||||| ||| | ||||||| ||||||  |||| | ||||||||| |||||||||||||||||    
T  4361223 ttcatatccacacaaagaaataaatccaatgcgttttgatcttacaattgaaaagggtacttttgttataccagt 4361149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 397 - 533
Target Start/End: Original strand, 6498399 - 6498535
Alignment:
Q  397 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 496  Q
    |||||||||| ||||  ||||||||||| ||||| ||| ||||| |||||||| || ||||||| | | ||||  ||||| || || |||||||||||||    
T  6498399 acattatttgatggtgacatccaagaccgaatgagagaaggaaatacatcacgtgaaaatcctttaaatccacctaaagaaatgtatccaatgctttttg 6498498  T
Q  497 actttactactgaaaagggcacttttgttataccagt 533  Q
    |  |||||| ||||||||| |||||||||||| ||||    
T  6498499 atcttactattgaaaagggaacttttgttatagcagt 6498535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 533
Target Start/End: Complemental strand, 6753150 - 6753032
Alignment:
Q  415 atccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaagg 514  Q
    |||||||||| ||||| ||| || || |||||||| || ||||||||| | ||||  ||||| ||||| |||||||||||  |  |||||| ||||||||    
T  6753150 atccaagaccgaatgagagaagggaatacatcacgtgaaaatccttcaaagccacgaaaagaaatatatccaatgcttttcaatcttactattgaaaagg 6753051  T
Q  515 gcacttttgttataccagt 533  Q
    |||||||||||||| ||||    
T  6753050 gcacttttgttatagcagt 6753032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 533
Target Start/End: Original strand, 6545321 - 6545457
Alignment:
Q  397 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 496  Q
    |||||||||| ||||  || |||||||| ||||| ||| || || |||||||| || ||||||||| | ||||  ||||| ||||| |||||||||||      
T  6545321 acattatttgatggtgacagccaagaccgaatgagagaagggaatacatcacgtgaaaatccttcaaagccacgaaaagaaatatatccaatgcttttca 6545420  T
Q  497 actttactactgaaaagggcacttttgttataccagt 533  Q
    |  | |||| |||||||||||||||||||||| ||||    
T  6545421 atctaactattgaaaagggcacttttgttatagcagt 6545457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 524
Target Start/End: Original strand, 6588069 - 6588196
Alignment:
Q  397 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 496  Q
    |||||||||| |||   ||||||||||| ||||| ||| || || |||||||| || ||||||||| | ||||| ||||| ||||| |||||||||||      
T  6588069 acattatttgatggcgacatccaagaccgaatgagagaagggaatacatcacgtgaaaatccttcaaagccacaaaaagaaatatatccaatgcttttca 6588168  T
Q  497 actttactactgaaaagggcacttttgt 524  Q
     | |||||| |||||| |||||||||||    
T  6588169 tccttactattgaaaatggcacttttgt 6588196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 436 - 533
Target Start/End: Original strand, 6621419 - 6621516
Alignment:
Q  436 ggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaagggcacttttgttataccagt 533  Q
    ||||||||||| || || ||||||||| | ||||| ||||| ||||| |||||| |||| ||   ||||| ||||||||| |||||||||||| ||||    
T  6621419 ggaaacacatcccgtgaaaatccttcaaatccacataaagaaatatatccaatgtttttagatcgtactattgaaaagggaacttttgttatagcagt 6621516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 533
Target Start/End: Complemental strand, 6728614 - 6728478
Alignment:
Q  397 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 496  Q
    |||||||||| |||   ||||||||||||||  | ||| || || |||||||| || ||||||||| | ||||  ||||| ||||| ||||| |||||      
T  6728614 acattatttgatggcgacatccaagaccaaacaagagaagggaatacatcacgtgaaaatccttcaaagccacgaaaagaaatatatccaatacttttca 6728515  T
Q  497 actttactactgaaaagggcacttttgttataccagt 533  Q
    |  |||||| |||||| ||||||||||||||| ||||    
T  6728514 atcttactattgaaaatggcacttttgttatagcagt 6728478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 527
Target Start/End: Original strand, 4133386 - 4133428
Alignment:
Q  485 caatgctttttgactttactactgaaaagggcacttttgttat 527  Q
    |||||||||||||| || | |||||||||||||||||||||||    
T  4133386 caatgctttttgaccttgcgactgaaaagggcacttttgttat 4133428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 533
Target Start/End: Complemental strand, 6651275 - 6651139
Alignment:
Q  397 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 496  Q
    |||||| ||| ||||  ||||||||||| || || | | ||||| ||||| || || ||||||||| | ||||| | ||| ||||| |||||| || ||     
T  6651275 acattagttgatggtgacatccaagaccgaacgagaaaaggaaatacatctcgtgaaaatccttcaaagccacatagagaaatatatccaatgtttctta 6651176  T
Q  497 actttactactgaaaagggcacttttgttataccagt 533  Q
    |  |||||| |||||| ||||||||||||||| ||||    
T  6651175 atcttactattgaaaacggcacttttgttatagcagt 6651139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 533
Target Start/End: Complemental strand, 6815678 - 6815542
Alignment:
Q  397 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 496  Q
    |||||||||| ||||  ||||||||| | || || ||| | ||| |||||||| |  ||||||||| | ||||  ||||| ||||| |||||||||||      
T  6815678 acattatttgatggtgacatccaagagcgaacgagagaagaaaatacatcacgtgtaaatccttcaaagccacctaaagaaatatatccaatgcttttca 6815579  T
Q  497 actttactactgaaaagggcacttttgttataccagt 533  Q
    |  |||| |||||||| ||||||||| ||||| ||||    
T  6815578 atcttaccactgaaaatggcactttttttatagcagt 6815542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 399 - 515
Target Start/End: Original strand, 5066569 - 5066685
Alignment:
Q  399 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 498  Q
    |||||||||||||  |||||||||| |||||||||| |||||||||||||| |||||||||||||| || ||||||||||| || |||||||||||||||    
T  5066569 attatttgttggtgacatccaagacaaaatgatagatggaaacacatcacgcgagaatccttcatagccgcacaaagagatgtatccaatgctttttgac 5066668  T
Q  499 tttactactgaaaaggg 515  Q
     ||||||||||||||||    
T  5066669 cttactactgaaaaggg 5066685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 399 - 527
Target Start/End: Original strand, 5073783 - 5073911
Alignment:
Q  399 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 498  Q
    ||||||||| |||  |||||||||||||||||| || || ||||||||||| |||||||||||||| || |||||||| ||||| ||||||||||| |||    
T  5073783 attatttgtcggtgacatccaagaccaaatgatcgatgggaacacatcacgtgagaatccttcatagccgcacaaagaaatatatccaatgcttttcgac 5073882  T
Q  499 tttactactgaaaagggcacttttgttat 527  Q
     |||||||||||||||||||| |||||||    
T  5073883 cttactactgaaaagggcactcttgttat 5073911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 399 - 527
Target Start/End: Original strand, 5102489 - 5102617
Alignment:
Q  399 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 498  Q
    |||||||||||||  |||||||||||| |||||||| |||||||||||| | || | ||||||||| ||||| | ||||||||| |||||||||||||||    
T  5102489 attatttgttggtgacatccaagaccagatgatagatggaaacacatcatgtgaaagtccttcatagccacatagagagatatatccaatgctttttgac 5102588  T
Q  499 tttactactgaaaagggcacttttgttat 527  Q
     |||||||||||||||||||| |||||||    
T  5102589 cttactactgaaaagggcactgttgttat 5102617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 399 - 515
Target Start/End: Original strand, 5157503 - 5157619
Alignment:
Q  399 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 498  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| || ||||||||||| || | ||||||||| || |||||||||||||||    
T  5157503 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgagaaaatccttcatagccgcccaaagagatgtatccaatgctttttgac 5157602  T
Q  499 tttactactgaaaaggg 515  Q
     ||||||||||||||||    
T  5157603 cttactactgaaaaggg 5157619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 404 - 527
Target Start/End: Complemental strand, 5345062 - 5344939
Alignment:
Q  404 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttac 503  Q
    ||||||||  |||||||||||| |||||||| ||||| ||||| || |||||||||||||| ||||||| ||| ||||| ||||||||||||||| ||||    
T  5345062 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 5344963  T
Q  504 tactgaaaagggcacttttgttat 527  Q
    |||| ||||||| |||||||||||    
T  5344962 tactaaaaagggaacttttgttat 5344939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 404 - 525
Target Start/End: Original strand, 5243793 - 5243914
Alignment:
Q  404 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttac 503  Q
    ||||||||  |||||||||||| |||||||| ||||| ||||| || || ||||||||||| ||||||||||| ||||| || |||||||||||| ||||    
T  5243793 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgaaaatccttcatagccacacaaagaaatatatccgatgctttttgaccttac 5243892  T
Q  504 tactgaaaagggcacttttgtt 525  Q
    |||||||||||||||| |||||    
T  5243893 tactgaaaagggcactcttgtt 5243914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 393 - 533
Target Start/End: Complemental strand, 5096920 - 5096780
Alignment:
Q  393 tgagacattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctt 492  Q
    ||||| |||||||||||||  || ||||||||| ||||||||||||||||||||||| || ||||||||||  ||||| | ||| || || |||||||||    
T  5096920 tgagagattatttgttggtgacaaccaagaccagatgatagacggaaacacatcacgtgaaaatccttcatggccacatagagaaatgtatccaatgctt 5096821  T
Q  493 tttgactttactactgaaaagggcacttttgttataccagt 533  Q
    |||||| |||||||||||||||| ||| || |||| |||||    
T  5096820 tttgaccttactactgaaaagggtactctttttattccagt 5096780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 399 - 527
Target Start/End: Original strand, 5181802 - 5181930
Alignment:
Q  399 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 498  Q
    ||||||||| |||  |||||||||||||||||| |  |||||||||||| | |||||||||||||| |||||||| || |||||  |||||||||| |||    
T  5181802 attatttgtcggtgacatccaagaccaaatgatcgctggaaacacatcatgtgagaatccttcatatccacacaaggaaatatatgcaatgcttttggac 5181901  T
Q  499 tttactactgaaaagggcacttttgttat 527  Q
    |||||||||||||| |||||| |||||||    
T  5181902 tttactactgaaaacggcactcttgttat 5181930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 399 - 527
Target Start/End: Original strand, 5354489 - 5354617
Alignment:
Q  399 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 498  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||||||||| ||     
T  5354489 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgagaatccttcatagccacataaagaaatatatccaatgcttttggaa 5354588  T
Q  499 tttactactgaaaagggcacttttgttat 527  Q
     | |||| ||| ||||| ||| |||||||    
T  5354589 ctaactattgagaagggtactcttgttat 5354617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 404 - 527
Target Start/End: Complemental strand, 5176940 - 5176817
Alignment:
Q  404 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttac 503  Q
    ||||||||  |||||||||||||||||| || ||||| | |||||| |||||||||||||| || ||||||||||| || ||||||||||||||| ||||    
T  5176940 ttgttggtgacatccaagaccaaatgattgatggaaatatatcacgtgagaatccttcatagccgcacaaagagatgtatccaatgctttttgaccttac 5176841  T
Q  504 tactgaaaagggcacttttgttat 527  Q
    || ||| ||||||||| |||||||    
T  5176840 tattgacaagggcactcttgttat 5176817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 402 - 515
Target Start/End: Original strand, 5128295 - 5128408
Alignment:
Q  402 atttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgacttt 501  Q
    ||||||||||  |||||||||||| |||||||| |||||||||||||  || ||||||||||  || |||| ||||||||| ||||||||||||||| ||    
T  5128295 atttgttggtgacatccaagaccagatgatagatggaaacacatcacttgaaaatccttcatggccgcacagagagatatatccaatgctttttgacctt 5128394  T
Q  502 actactgaaaaggg 515  Q
    ||||||||||||||    
T  5128395 actactgaaaaggg 5128408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 399 - 515
Target Start/End: Complemental strand, 5426116 - 5426000
Alignment:
Q  399 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 498  Q
    |||||||||||||  |||||||||||||||||| |  |||||||||||||| || ||||||||||| || ||||||||||| || |||||||||| ||||    
T  5426116 attatttgttggtgacatccaagaccaaatgatcgctggaaacacatcacgtgaaaatccttcatagccgcacaaagagatgtatccaatgctttgtgac 5426017  T
Q  499 tttactactgaaaaggg 515  Q
     |||| |||||||||||    
T  5426016 attaccactgaaaaggg 5426000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 404 - 527
Target Start/End: Complemental strand, 5278767 - 5278644
Alignment:
Q  404 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttac 503  Q
    ||||||||  |||||||||||||||||| || ||||| | |||||| |||||||||||||| || ||||||||||| || ||||||||||||||| ||||    
T  5278767 ttgttggtgacatccaagaccaaatgattgatggaaatatatcacgtgagaatccttcatagccgcacaaagagatgtatccaatgctttttgaccttac 5278668  T
Q  504 tactgaaaagggcacttttgttat 527  Q
    ||  || ||||||||| |||||||    
T  5278667 tatagacaagggcactcttgttat 5278644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 404 - 533
Target Start/End: Original strand, 5690039 - 5690168
Alignment:
Q  404 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttac 503  Q
    ||||||||  ||||||||||||||||||||| ||||| | |||||| |||||||||||||  || |||| ||| ||||| ||||||||||||||| ||||    
T  5690039 ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatgtccgcacagagaaatatacccaatgctttttgaccttac 5690138  T
Q  504 tactgaaaagggcacttttgttataccagt 533  Q
     | ||||||||||||  ||||||| |||||    
T  5690139 aattgaaaagggcacacttgttattccagt 5690168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 438 - 515
Target Start/End: Complemental strand, 5350561 - 5350484
Alignment:
Q  438 aaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaaggg 515  Q
    |||||||||||| || ||||||||||| || ||||||||||| || ||||||||||||||| ||||||||||||||||    
T  5350561 aaacacatcacgtgaaaatccttcatagccgcacaaagagatgtatccaatgctttttgaccttactactgaaaaggg 5350484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 515
Target Start/End: Complemental strand, 5370774 - 5370661
Alignment:
Q  402 atttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgacttt 501  Q
    ||||||||||  ||||||||||||||||||||| ||||| |||||| | || |||||| |||  |||||||| || || || |||||||||||||||  |    
T  5370774 atttgttggtgacatccaagaccaaatgatagatggaaaaacatcatgtgaaaatcctacatggccacacaatgaaatgtatccaatgctttttgaccgt 5370675  T
Q  502 actactgaaaaggg 515  Q
    ||||||||||||||    
T  5370674 actactgaaaaggg 5370661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 399 - 527
Target Start/End: Complemental strand, 5447793 - 5447665
Alignment:
Q  399 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 498  Q
    ||||||| |||||  ||||||||||| ||| ||||| |||||||||||| | ||| |||||||| | || |||||||| ||||| |||||||| || |||    
T  5447793 attatttcttggtgacatccaagaccgaataatagatggaaacacatcatgcgaggatccttcaaatccgcacaaagaaatatatccaatgctcttcgac 5447694  T
Q  499 tttactactgaaaagggcacttttgttat 527  Q
     | ||||| |||||||||||| |||||||    
T  5447693 ctaactaccgaaaagggcactgttgttat 5447665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 399 - 497
Target Start/End: Complemental strand, 5434241 - 5434143
Alignment:
Q  399 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttga 497  Q
    |||||||||||||  ||||||||||  ||||||| | ||||| | |||  | |||||||||||||| || |||||||||||||| ||||||||||||||    
T  5434241 attatttgttggtgacatccaagactgaatgataaatggaaataaatcgtgtgagaatccttcataaccgcacaaagagatatatccaatgctttttga 5434143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 495
Target Start/End: Complemental strand, 5397151 - 5397060
Alignment:
Q  404 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgcttttt 495  Q
    ||||||||  |||||||||| |||||||||  |||||||| ||||  || ||||||||||| || |||||||||||| | ||||||||||||    
T  5397151 ttgttggtgacatccaagacgaaatgatagctggaaacacttcacatgaaaatccttcatatccgcacaaagagataaatccaatgcttttt 5397060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 527
Target Start/End: Complemental strand, 5383517 - 5383404
Alignment:
Q  414 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaag 513  Q
    ||||||||||  |||||| || |||||||||||||| |||||||||||||  || |||||||| |||||  |||| ||||||||| |||  | ||||| |    
T  5383517 catccaagacttaatgatggatggaaacacatcacgtgagaatccttcatggccgcacaaagaaatatatacaatactttttgaccttaaaattgaaagg 5383418  T
Q  514 ggcacttttgttat 527  Q
    || ||| |||||||    
T  5383417 ggaactcttgttat 5383404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 527
Target Start/End: Original strand, 5284264 - 5284392
Alignment:
Q  399 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 498  Q
    ||||||||||| |  |||||| ||| |||| ||  | ||||||||||| |  || | ||| ||||| || |||||||  ||||| ||||||||||| |||    
T  5284264 attatttgttgctgacatccatgacaaaattattaatggaaacacatcgcttgaaagtccctcataaccgcacaaagcaatatatccaatgcttttcgac 5284363  T
Q  499 tttactactgaaaagggcacttttgttat 527  Q
     |||||||||||||||||||| |||||||    
T  5284364 cttactactgaaaagggcactcttgttat 5284392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 5181633 - 5181708
Alignment:
Q  239 ataatgcattcaaaattcttgttgtgtcttgtgaaagttgaagttctgattcacactcaaaccaaaggcattgaag 314  Q
    |||| |||| ||||||||||  ||||||||| |||||||||||||||||  ||||||||| |||||| ||| ||||    
T  5181633 ataaagcatccaaaattctttctgtgtcttgagaaagttgaagttctgagccacactcaacccaaagacatcgaag 5181708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 5397388 - 5397324
Alignment:
Q  191 cttgtgatgtagttgcagttgatttcaattccttagaatttgctgcacataatgcattcaaaatt 255  Q
    ||||||||||||||  |||||||| |||||| ||||||||||  |||||||  |||| |||||||    
T  5397388 cttgtgatgtagttttagttgattccaattctttagaatttgtagcacatagagcatccaaaatt 5397324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 399 - 512
Target Start/End: Complemental strand, 8877815 - 8877702
Alignment:
Q  399 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 498  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| || ||||||||||| || |||||||| ||||| |||||||||||||||    
T  8877815 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgcgaaaatccttcatagccgcacaaagaaatatatccaatgctttttgac 8877716  T
Q  499 tttactactgaaaa 512  Q
     |||||| ||||||    
T  8877715 cttactaatgaaaa 8877702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 535
Target Start/End: Complemental strand, 20838823 - 20838702
Alignment:
Q  414 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaag 513  Q
    ||||||||||||||||| ||| ||||| |||||| | || ||||||||||| ||||| |  || ||||| ||||||||||||||  || ||| |||| ||    
T  20838823 catccaagaccaaatgagagaaggaaaaacatcatgtgataatccttcatatccacatagtgatatatatccaatgctttttgatcttgctattgaatag 20838724  T
Q  514 ggcacttttgttataccagtat 535  Q
    ||||||| | | ||||||||||    
T  20838723 ggcacttgtttgataccagtat 20838702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 12599062 - 12599142
Alignment:
Q  414 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttt 494  Q
    ||||||||||||| ||| ||| ||||| |||||||| || ||||||||||| |||||||| || ||||| |||||||||||    
T  12599062 catccaagaccaattgagagaaggaaaaacatcacgtgataatccttcatatccacacaaggatatatatccaatgctttt 12599142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 535
Target Start/End: Complemental strand, 20812468 - 20812347
Alignment:
Q  414 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaag 513  Q
    ||||||||||||||||| ||| ||||| |||||||| || |||||||| || ||||| |  || |||||  |||||||||||||  || ||| |||| ||    
T  20812468 catccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcgtatccacatagtgatatatatgcaatgctttttgatcttgctattgaatag 20812369  T
Q  514 ggcacttttgttataccagtat 535  Q
    ||||||| | | ||||||||||    
T  20812368 ggcacttgtttgataccagtat 20812347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 497
Target Start/End: Complemental strand, 15803101 - 15803019
Alignment:
Q  415 atccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttga 497  Q
    |||||||||| ||||| ||| ||||| |||||| | || ||||||| ||| ||||| | ||| ||||| ||||||||||||||    
T  15803101 atccaagacctaatgagagaaggaaaaacatcatgtgataatcctttatatccacatagagatatatatccaatgctttttga 15803019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 402 - 527
Target Start/End: Original strand, 36213707 - 36213832
Alignment:
Q  402 atttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgacttt 501  Q
    ||||||||||  ||||||||||||||||||||| |||||||||||| | |||||||||||||| || |||||||| |||||  | |||||||| ||  ||    
T  36213707 atttgttggtgacatccaagaccaaatgatagatggaaacacatcatgtgagaatccttcatagccgcacaaagatatataagcgatgcttttagatctt 36213806  T
Q  502 actactgaaaagggcacttttgttat 527  Q
    ||||||||||| |||||| |||||||    
T  36213807 actactgaaaatggcactcttgttat 36213832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 526
Target Start/End: Complemental strand, 18935577 - 18935465
Alignment:
Q  414 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaag 513  Q
    ||||||||||  ||| || || |||||||||| ||| |  ||||||||| | |||||||  || ||| | ||||||||||||||  ||||||||| ||||    
T  18935577 catccaagactgaataattgaaggaaacacattacgtgctaatccttcaaatccacacagtgaaataaatccaatgctttttgatcttactactgcaaag 18935478  T
Q  514 ggcacttttgtta 526  Q
    |||||| ||||||    
T  18935477 ggcactcttgtta 18935465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 399 - 526
Target Start/End: Original strand, 8775 - 8902
Alignment:
Q  399 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 498  Q
    ||||||||||||   ||||||||||  ||||||||| |||||||||||||| |||||||||||||  || |||||||| |||||  |||| |||||||||    
T  8775 attatttgttggagacatccaagacttaatgatagatggaaacacatcacgtgagaatccttcatggccgcacaaagaaatatatacaatactttttgac 8874  T
Q  499 tttactactgaaaagggcacttttgtta 526  Q
     |||||| ||||||||||||| ||||||    
T  8875 cttactattgaaaagggcactcttgtta 8902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 47986747 - 47986812
Alignment:
Q  399 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcata 464  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  47986747 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 47986812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 47996034 - 47996099
Alignment:
Q  399 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcata 464  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  47996034 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 47996099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 48005321 - 48005386
Alignment:
Q  399 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcata 464  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  48005321 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 48005386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 48014606 - 48014671
Alignment:
Q  399 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcata 464  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  48014606 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 48014671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 497
Target Start/End: Original strand, 6905806 - 6905899
Alignment:
Q  404 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttga 497  Q
    ||||||||  ||||||||||||||||| ||| ||||| | |||||| || ||||||||||| || || |  || |||||  |||||||||||||    
T  6905806 ttgttggtgacatccaagaccaaatgagagaaggaaaaatatcacgtgataatccttcatatccgcatagggatatatacacaatgctttttga 6905899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 414 - 518
Target Start/End: Original strand, 3262637 - 3262740
Alignment:
Q  414 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaag 513  Q
    ||||||||||||||||||||| ||||| |||||||| || ||||| ||||| ||||| |  || ||||| ||||||||||||||  |||||| |||| ||    
T  3262637 catccaagaccaaatgatagagggaaaaacatcacgtgaaaatcc-tcatatccacatagggatatatatccaatgctttttgatcttactattgaatag 3262735  T
Q  514 ggcac 518  Q
    |||||    
T  3262736 ggcac 3262740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 535
Target Start/End: Complemental strand, 31176038 - 31175917
Alignment:
Q  414 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaag 513  Q
    ||||||||||||||||| ||| ||||| || ||||  || ||||||||||| ||||| | ||| |||||  |||||||||||||  || ||| |||| ||    
T  31176038 catccaagaccaaatgagagaaggaaaaacgtcacatgataatccttcatatccacatagagatatatatgcaatgctttttgatcttgctattgaatag 31175939  T
Q  514 ggcacttttgttataccagtat 535  Q
    ||||||| | | ||||||||||    
T  31175938 ggcacttgtttgataccagtat 31175917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 470
Target Start/End: Original strand, 3407323 - 3407389
Alignment:
Q  404 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccaca 470  Q
    ||||||||  ||||||||||||||||||||| ||||| |||||||| || ||||||| ||| |||||    
T  3407323 ttgttggtgacatccaagaccaaatgatagaaggaaaaacatcacgtgataatccttgatatccaca 3407389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 404 - 497
Target Start/End: Original strand, 3391536 - 3391629
Alignment:
Q  404 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttga 497  Q
    ||||||||  ||||||||||| ||||| ||| ||||| |||| | | || ||||||||||| ||||| | ||| ||||| ||||||||||||||    
T  3391536 ttgttggtgacatccaagacctaatgagagaaggaaaaacatgatgtgataatccttcatatccacatagagatatatatccaatgctttttga 3391629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 3315049 - 3314966
Alignment:
Q  414 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttga 497  Q
    ||||||||||||||||||||| ||||| |||||||| || || ||||||||  |||| |  || ||||| |||||| |||||||    
T  3315049 catccaagaccaaatgatagaaggaaaaacatcacgtgataaaccttcatattcacatagggatatatatccaatgttttttga 3314966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 497
Target Start/End: Complemental strand, 3364359 - 3364277
Alignment:
Q  415 atccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttga 497  Q
    |||||||||| ||||| ||| ||||| |||| | | || ||||||||||| ||||| | ||| ||||| ||||||||||||||    
T  3364359 atccaagacctaatgagagaaggaaaaacatgatgtgataatccttcatatccacatagagatatatatccaatgctttttga 3364277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 495
Target Start/End: Original strand, 3325010 - 3325091
Alignment:
Q  414 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgcttttt 495  Q
    ||||||||||||||||||||| ||||| |||||  | || | ||||||||| ||||| |  || ||||| ||||||||||||    
T  3325010 catccaagaccaaatgatagaaggaaaaacatcgtgtgatagtccttcatatccacagagggatatatatccaatgcttttt 3325091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 436 - 533
Target Start/End: Complemental strand, 6828 - 6731
Alignment:
Q  436 ggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaagggcacttttgttataccagt 533  Q
    ||||||||||| || || ||||||||| | ||||| ||||| ||||| |||||| |||| ||   ||||| ||||||||| |||||||||||| ||||    
T  6828 ggaaacacatcccgtgaaaatccttcaaatccacataaagaaatatatccaatgtttttagatcgtactattgaaaagggaacttttgttatagcagt 6731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 533
Target Start/End: Original strand, 4699 - 4835
Alignment:
Q  397 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 496  Q
    |||||| ||| ||||  ||||||||||| || || | | ||||| ||||| || || ||||||||| | ||||| | ||| ||||| |||||| || ||     
T  4699 acattagttgatggtgacatccaagaccgaacgagaaaaggaaatacatctcgtgaaaatccttcaaagccacatagagaaatatatccaatgtttctta 4798  T
Q  497 actttactactgaaaagggcacttttgttataccagt 533  Q
    |  |||||| |||||| ||||||||||||||| ||||    
T  4799 atcttactattgaaaacggcacttttgttatagcagt 4835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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