View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_low_7 (Length: 521)
Name: NF13262_low_7
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 35013675 - 35013170
Alignment:
| Q |
1 |
gtgaataataatctatatggcttgtgaatttatttaatgtcctccacttcttttcttatcaaacattatgcatgttttcttttgctaagaaaacaagtat |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35013675 |
gtgaataataatctatatggcttgtgaatttagttaatgtcctccacttcttttcttatcaagcattatgcatgttttcttttgctaagaaaacaagtag |
35013576 |
T |
|
| Q |
101 |
cataaaatgaggatgtgtttaatttgatgtagcaagtgaccataaataaagtttagaacgagatgaatgagtatagaattaatagaaagtgacattactg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35013575 |
cataaaatgaggatgtgtttaatttgatgtagcaagtgaccataaataaagtttagaacgagatgaatgagtatagaattaatagaaagtgacattactg |
35013476 |
T |
|
| Q |
201 |
gatgcaactaaattagttagccagatgatatatattgtcacatatagagtgatacattaattgatcaaagctactttatcttttgacagaattaatcaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35013475 |
gatgcaactaaattagttagccagatgatatatattgtcacatatagagtgatacattaattgatcaaagctactttatcttttgacagaattaatcaaa |
35013376 |
T |
|
| Q |
301 |
gctacttattcctcttcaataacagcattcatgaaaagggaagattgatcataaaaaatgtgtgatatcaaccccttagctcaataatgagactttttct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35013375 |
gctacttattcctcttcaataacagcattcatgaaaagggaagattgatcataaaaaatgtgtgatttcaaccccttagctcaataatgagactttttct |
35013276 |
T |
|
| Q |
401 |
tacaatctttcatggcatatgcttttggtgaaagaattaaagtaggtatatggcaccaattagtgggtagtgacaatcattaatgagaataattgtggaa |
500 |
Q |
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| T |
35013275 |
tacaatctttcatggcatatgcttttggtgaaagaattaaagtaggtatatggcaccaattagtgggtagtgacaatcattaatgagaataattgtggaa |
35013176 |
T |
|
| Q |
501 |
ttaaat |
506 |
Q |
| |
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|||||| |
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| T |
35013175 |
ttaaat |
35013170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 93 - 325
Target Start/End: Complemental strand, 4459716 - 4459487
Alignment:
| Q |
93 |
acaagtatcataaaatgaggatgtgtttaatttgatgtagcaagtgaccataaataaagtttagaacgagatgaatgagtatagaattaatagaaagtga |
192 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||| |
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| T |
4459716 |
acaagtagcataaaatgagaatgtgtttaatttgatgtagcaagtgaccataaataaagtttacaacggggtgaatgagtatagaattaatagaaagtga |
4459617 |
T |
|
| Q |
193 |
cattactggatgcaactaaattagttagccagatgatatatattgtcacatatagagtgatacattaattgatcaaagctactttatcttttgacagaat |
292 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4459616 |
aattactggatgtaactaaattagttagccagatgatatatattgtcacatatagagtgatacattaattgatcaaagctactttatcttttgacagaat |
4459517 |
T |
|
| Q |
293 |
taatcaaagctacttattcctcttcaataacag |
325 |
Q |
| |
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|||| ||||||| |||||||||||||||||| |
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| T |
4459516 |
taat---agctactcattcctcttcaataacag |
4459487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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