View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_low_8 (Length: 499)
Name: NF13262_low_8
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_low_8 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 35035152 - 35035659
Alignment:
| Q |
1 |
aacggatgtgaagaacaaatctaagtttttaggtgatgtttgatataaagggtttagagctttgagaaatccaaacccaaaaaaggaaatagagatgaaa |
100 |
Q |
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| T |
35035152 |
aacggatgtgaagaacaaatctaagtttttaggtgatgtttgatataaagggtttagagctttgagaaatccaaacccaaaaaaggaaatagagatgaaa |
35035251 |
T |
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| Q |
101 |
tatagaatttgaacacataatggatttgctcttaggaggatgaagcgacaaaaacatattgctaagnnnnnnnntgatttggttagacaagcaacttttt |
200 |
Q |
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| T |
35035252 |
tatagaatttgaacacataatggatttgctcttaggaggatgaagcgataaaaacatattcctaagaaaaaaaatgatttggttagacaagcaaattttt |
35035351 |
T |
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| Q |
201 |
gacatgaagtgttacaaaggagttgaaactttttcatataacaacctaagatctccatcttgatttgttgcaatgattgatttccaatgcaaga----gt |
296 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35035352 |
gaaatgaagtgttacaaaggagttgaaactttttcatataacaacctaagatctccatcttgatttgttgcaatgattgatttccaatgcaagagtgtgt |
35035451 |
T |
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| Q |
297 |
gtgtatttaaagaataatttccgtgtgggtaatgctacactttatgtggctatcatgtgtttatttaaatgtc-nnnnnnnnnnnnnnataataatttgt |
395 |
Q |
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| T |
35035452 |
gtgtatttaaagaataatttccgtgtgggtaatgctacactttatgtggctatcatgtgtttatttaaatgtctttttatttatttttataataatttgt |
35035551 |
T |
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| Q |
396 |
atagacttttgtcttttcctataa----taatttgtatggagttttgtcttagtatatctgatatttaaggtccaacactgaaccatcatccatttttac |
491 |
Q |
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| T |
35035552 |
atagacttttgtcttttcctataataattaatttgtatggagttttgtcttagtatatctgatatttaaggtccaacactgaaccatcatccatttttac |
35035651 |
T |
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| Q |
492 |
ctactata |
499 |
Q |
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| T |
35035652 |
ctactata |
35035659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 34974431 - 34974660
Alignment:
| Q |
4 |
ggatgtgaagaacaaatctaagtttttaggtgatgtttgatataaagggtttagagctttgagaaatccaaacccaaaaaaggaaatagagatgaaatat |
103 |
Q |
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||||||||||||||||||||| |||||||||| ||| | |||||| |||||| |||||||||||||||| || ||| |||| ||| |||||||| |
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| T |
34974431 |
ggatgtgaagaacaaatctaaatttttaggtg---tttcacctaaaggttttagaactttgagaaatccaaaacccaaagttgaaagagatgtgaaatat |
34974527 |
T |
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| Q |
104 |
agaatttgaacacataatggatttgctcttaggaggatgaagcgacaaaaacatattgctaagnnnnnnnntgatttggttagacaagcaactttttgac |
203 |
Q |
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| T |
34974528 |
acaatttgaacccataatgggtttgctcttaggaggatgaagcgacaaaaacatgctgctaagaaaaaaattgatttggtttgacatgcaattctttgaa |
34974627 |
T |
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| Q |
204 |
atgaagtgttacaaaggagttgaaactttttca |
236 |
Q |
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| T |
34974628 |
gtgatgtgctacaaaggtgttgcaactttttca |
34974660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 34955966 - 34956119
Alignment:
| Q |
1 |
aacggatgtgaagaacaaatctaagtttttaggtgatgtttgatataaagggtttagagctttgagaaatccaaacccaaaaaaggaaatagagatgaaa |
100 |
Q |
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|||||||||||||||||||||||| ||||| ||| ||||| ||| || ||||||||||||||||||||||| || ||| ||||| || |||||| |
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| T |
34955966 |
aacggatgtgaagaacaaatctaaatttttttgtg---tttgacctaagggttttagagctttgagaaatccaaaacccaaagttgaaatggatatgaaa |
34956062 |
T |
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| Q |
101 |
tatagaatttgaacacataatggatttgctcttaggaggatgaagcgacaaaaacat |
157 |
Q |
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|||| |||||||||||||| ||| |||| ||||||||||||||| ||| | |||||| |
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| T |
34956063 |
tatacaatttgaacacatagtgggtttgatcttaggaggatgaatcgatataaacat |
34956119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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