View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13262_low_9 (Length: 459)
Name: NF13262_low_9
Description: NF13262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13262_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 12 - 443
Target Start/End: Original strand, 21194916 - 21195347
Alignment:
| Q |
12 |
atgaacaacagggtttggtgcccctagctggttccaacgatgaatcatggtgtcaaggtctggacggtcttgcctctcgttcagctgcatactaccaaca |
111 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21194916 |
atgaacaaaagggtatggtgcccctagctggttccaacgatgaatcatggtgccaaggtctggacggtcttgcctctcgttcagctgcatactaccaaca |
21195015 |
T |
|
| Q |
112 |
aggtgctcgtttcgccaaatggtgagtgtacccctgcagtatccctctgtggaagcaaaataataatttcagctgcatactacttatcatgctcannnnn |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21195016 |
aggtgctcgtttcgccaaatggtgagtgtacccctgcagtatccctctgtggaagcaaaataataatttcagctgcatactacttatcatgctcattttt |
21195115 |
T |
|
| Q |
212 |
nnaaccacacaaatttcaattgcatattaggcgtactgttgtgagcatccctaacggtccctctgctctggctgtcaaggaagcagcctggggtttggcc |
311 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21195116 |
ttaaccacgcaaatttcaattgcatattaggcgtactgttgtgagcatccctaacggtccctctgctctggctgtcaaggaagcagcctggggtttggcc |
21195215 |
T |
|
| Q |
312 |
cgctatgctgcaattagtcaggtgaaaaaaccattcaaattatataattgatttattttaattcatagttattacatcaataactattgaaaaaggtcta |
411 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21195216 |
cgctatgctgcaattagtcaggtgaaaaaaccattcaaattatataattgatttattttaattcatagttattacatcaataacttttgaaaaaggtcta |
21195315 |
T |
|
| Q |
412 |
tgaccccgatcattatttcattatcatgcaac |
443 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
21195316 |
tgaccccgatcattatttcattatcatgcaac |
21195347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 214 - 441
Target Start/End: Original strand, 27250869 - 27251096
Alignment:
| Q |
214 |
aaccacacaaatttcaattgcatattaggcgtactgttgtgagcatccctaacggtccctctgctctggctgtcaaggaagcagcctggggtttggcccg |
313 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27250869 |
aaccacgcaaatttcaattgcatattaggcgtactgttgtgagcatccctaacggtccctctgctctggctgtcaaggaagcagcctggggtttggctcg |
27250968 |
T |
|
| Q |
314 |
ctatgctgcaattagtcaggtgaaaaaaccattcaaattatataattgatttattttaattcatagttattacatcaataactattgaaaaaggtctatg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27250969 |
ctatgctgcaattagtcaggtgaaaaaaccattcaaattatataattgatttattttaattcatagttattacatcaataacttttgaaaaaggtctatg |
27251068 |
T |
|
| Q |
414 |
accccgatcattatttcattatcatgca |
441 |
Q |
| |
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||| |||||||||||||||||||||||| |
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|
| T |
27251069 |
acctcgatcattatttcattatcatgca |
27251096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 27250689 - 27250858
Alignment:
| Q |
12 |
atgaacaacagggtttggtgcccctagctggttccaacgatgaatcatggtgtcaaggtctggacggtcttgcctctcgttcagctgcatactaccaaca |
111 |
Q |
| |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27250689 |
atgaacaatagggtctggtgcccctagctggttccaacgatgaatcatggtgccaaggtctggacggtcttgcctctcgttcagctgcatactaccaaca |
27250788 |
T |
|
| Q |
112 |
aggtgctcgtttcgccaaatggtgagtgtacccctgcagtatccctctgtggaagcaaaataataatttc |
181 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
27250789 |
aggtgctcgttttgccaaatggtgagtgtacccctgcagtatccccttgtggaagcaaaataataatttc |
27250858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 221 - 389
Target Start/End: Original strand, 27262630 - 27262798
Alignment:
| Q |
221 |
caaatttcaattgcatattaggcgtactgttgtgagcatccctaacggtccctctgctctggctgtcaaggaagcagcctggggtttggcccgctatgct |
320 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||| || |||||||||||||| || ||||||||||||||||||||| |||| ||||| ||| |
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| T |
27262630 |
caaatttcaatcacatattaggcgtactgttttgagcatccccaatggtccctctgctcttgcagtcaaggaagcagcctggggtctggctcgctacgct |
27262729 |
T |
|
| Q |
321 |
gcaattagtcaggtgaaaaaaccattcaaattatataattgatttattttaattcatagttattacatc |
389 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||| || |||||| |||||||||||| |||||||||| |
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| T |
27262730 |
gcaattagtcaggtgagaaaaccactcaaattatacaagtgatttcttttaattcatacttattacatc |
27262798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 27262405 - 27262531
Alignment:
| Q |
12 |
atgaacaacagggtttggtgcccctagctggttccaacgatgaatcatggtgtcaaggtctggacggtcttgcctctcgttcagctgcatactaccaaca |
111 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
27262405 |
atgaacaatagggtttggtgccccttgctggttccaatgatgag--atggtgccaaggtctagacggtcttgcctctcgttcagctgcatactaccagca |
27262502 |
T |
|
| Q |
112 |
aggtgctcgtttcgccaaatggtgagtgt |
140 |
Q |
| |
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|| ||||| |||||||||||||| ||||| |
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|
| T |
27262503 |
agatgctcatttcgccaaatggttagtgt |
27262531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 49365632 - 49365519
Alignment:
| Q |
21 |
agggtttggtgcccctagctggttccaacgatgaatcatggtgtcaaggtctggacggtcttgcctctcgttcagctgcatactaccaacaaggtgctcg |
120 |
Q |
| |
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|||||||||| |||||| | || || ||| |||||||||||||||||||| |||| || | || ||| | || |||| ||||||| | ||||||||||| |
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| T |
49365632 |
agggtttggttcccctaccagggtcaaacaatgaatcatggtgtcaaggtttggatggattggcttctagatctgctgaatactacaagcaaggtgctcg |
49365533 |
T |
|
| Q |
121 |
tttcgccaaatggt |
134 |
Q |
| |
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|| ||||| |||| |
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|
| T |
49365532 |
atttgccaagtggt |
49365519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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