View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13263_high_13 (Length: 344)
Name: NF13263_high_13
Description: NF13263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13263_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 3708073 - 3708252
Alignment:
| Q |
28 |
aaactacaaatagttcactgattgtaagagaaactctttacttttgctttaatccaaaatcaaacgcataatttcgccatgtcaatcagtgaaccggtta |
127 |
Q |
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| T |
3708073 |
aaaccacaaatagttcactgattgtaagagaaactctttacttttgctttaatccaaaatcaaacgaataacttcgccatgtcaatcagtgaaccagtta |
3708172 |
T |
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| Q |
128 |
catcattctgat-tacaaaaactacaaattttatatgttttttgataatctaaacgcaactaaggtattccttcacctaactaa |
210 |
Q |
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| T |
3708173 |
catcattctgatgtacaaaaactacaaattttatatgttttttgataatctaaacgcaacgaag----tccttcacctaactaa |
3708252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 211 - 326
Target Start/End: Original strand, 3708509 - 3708623
Alignment:
| Q |
211 |
ggagtactaattaaacatgtcagtatattagtgattactaatatatttcgagagtgaaaagtacttatttatcttttacaaatgaattgtttgagagtgt |
310 |
Q |
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| T |
3708509 |
ggagtactaattaaacatgt-agtatattagtgattactaatatatttcaagagtgaaaaatacttatttatcttttacaaatgaatcgtttgagagtgt |
3708607 |
T |
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| Q |
311 |
cccaatacagtgactg |
326 |
Q |
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| T |
3708608 |
cctaatacagtgactg |
3708623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 3708012 - 3708055
Alignment:
| Q |
1 |
ataatacatgcactattccaataggcaaaactacaaatagttca |
44 |
Q |
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| T |
3708012 |
ataatacatgcactattccaataggcaaaactacaaatagttca |
3708055 |
T |
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