View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13263_high_17 (Length: 275)
Name: NF13263_high_17
Description: NF13263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13263_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 13721998 - 13722254
Alignment:
| Q |
1 |
ccttgaaatttgatgataacataccaacattctttgtttccttttataaggttattttcacactagacctcttccaacacaatctagacaatggatgcaa |
100 |
Q |
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| T |
13721998 |
ccttgaaatt-gatgataacatacgaacattctttgtttccttttataaggttattttcacactagacctcttccaacacaatctagacaatggatgcaa |
13722096 |
T |
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| Q |
101 |
cacaattagagaaaatctatgttgctgttggtgatgatgcacaagatggatttaatactttgaattgggcactcaagaaatggaaatctcatccaatttc |
200 |
Q |
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| T |
13722097 |
cacaattagagaaaatctatgttgctgttggtgatgatgcacaagatggatttaatactttgaattgggcactcaagaaatggaaatctcatccaatttc |
13722196 |
T |
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| Q |
201 |
cattgttattctccatgttactcataacatttctaaggagtatgtttatacaccatgt |
258 |
Q |
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| T |
13722197 |
cattgttattctccatgttactcataacatttctaaggagtatgtttatacaccatgt |
13722254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 28600951 - 28600846
Alignment:
| Q |
91 |
atggatgcaacacaattagagaaaatctatgttgctgttggtgatgatgcacaagatggatttaatactttgaattgggcactcaagaaatggaaatctc |
190 |
Q |
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|||||| |||| ||| | || ||||| |||||||| ||||| |||||| |||||||||| | || ||| ||||||| |||||||||||||| |||| |
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| T |
28600951 |
atggatacaactcaaattgaaaaaatatatgttgcagttggctatgatgtgttagatggatttcaaacattggattgggctctcaagaaatggaattctc |
28600852 |
T |
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| Q |
191 |
atccaa |
196 |
Q |
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|||||| |
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| T |
28600851 |
atccaa |
28600846 |
T |
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