View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13263_low_11 (Length: 374)
Name: NF13263_low_11
Description: NF13263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13263_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 2272001 - 2271648
Alignment:
| Q |
1 |
agaaacgcaggaagccagtaaatacaaaagcattacataccacattatttttgcaccgattctaaacttgagataataagtcattacttaccacattaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272001 |
agaaacgcaggaagccagtaaatacaaaagcattacataccacattatttttgcaccgattctaaacttgagataataagtcattacttaccacattaca |
2271902 |
T |
|
| Q |
101 |
ccaacattgtaactactttaattatgaacattttagttggtgtaaaatcccctctgtagaagaacaatattcatcttaaatttcagcattgaattcattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2271901 |
ccaacattgtaactactttaattatgaacattttagttggtgtaaaatcccctctgtagaagaacaatattcatcttaaatttcagcattgaattcattt |
2271802 |
T |
|
| Q |
201 |
cacgtactcatgaaatttattaacatcaaacttgagctttcctctttacaatactcgcatcaccattactatccaccaaaatactaaccaatggaccact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2271801 |
cacgtactcatgaaatttattaacatcaaacttgagctttcctctttacaatactcgcatcaccattactatccaccaaaatactaaccaatggaccact |
2271702 |
T |
|
| Q |
301 |
tcgtcactgcatattcatcatcataattaatgactttcaaaacaaggatttaat |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2271701 |
tcgtcactgcatattcatcatcataattaatgactttcaaaacaaggatttaat |
2271648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University