View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13263_low_12 (Length: 357)
Name: NF13263_low_12
Description: NF13263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13263_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 16978893 - 16979247
Alignment:
| Q |
1 |
tcatcaatgacagtatctaaggtaagagacttgttgtagcatttcactcttcagacttacacattctgaatacttaaaccaaacaaacattatagcataa |
100 |
Q |
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| T |
16978893 |
tcatcaatgacagtatctaaggtaagagacttgttgtagcatttcactcttcagacttacacattctgaatacttaaaccaaacaaacattatagcataa |
16978992 |
T |
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| Q |
101 |
ccattaaacttttgaagggatgctcttcatattttgtggaacatttcagcataaaatttcaaaattatatatagacattaatgttaatcttaaacttaca |
200 |
Q |
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| T |
16978993 |
ccattaaacttttgaagggatgctcttcatattttgtggaacatttcagcataaaatttcaaaattatatcaagacattaatgttaatcttaaacttaca |
16979092 |
T |
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| Q |
201 |
ccatcacaagtttgttagacatgtattgtctagataaatgaatatcctctcttttcttacaataatcaagtagtttaaattctgatatagnnnnnnnnna |
300 |
Q |
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| T |
16979093 |
ccatcacaagtttgttagacatgtattgtctagataaatgaatatcctctcttttcttacaataatcaagtagtttaaagtctgatata--agtttttta |
16979190 |
T |
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| Q |
301 |
taactatatacaataatacacttgagcaaacagtttttgaagggatattccaggttc |
357 |
Q |
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| T |
16979191 |
taactatatacaataatacacttgagcaaactgtttttgaagggatattccaggttc |
16979247 |
T |
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