View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13263_low_14 (Length: 329)
Name: NF13263_low_14
Description: NF13263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13263_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 43012595 - 43012294
Alignment:
| Q |
18 |
agccaaaactagggattgatagatgggctgctgagaggtaaatggttatttgtattcatagatgtaaccttttttcaatacacagttcagttttccactt |
117 |
Q |
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| T |
43012595 |
agccaaaactagggatttatagatgggctgctgagaggtaaatggttatttgtattcatagatgtaaccttttttcaatacacagttcagttttccactt |
43012496 |
T |
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| Q |
118 |
gctttgatatataggtgttagttagtttagttattaatttgatgttatatacttatatatgttaccttgtacatttgaaggtataagttagcagaggaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43012495 |
gctttgatatataggtgttagttagtttagttattaatttgatgttatatacttatatatgttaccttgtacatttgaaggtataagttagcagaggaga |
43012396 |
T |
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| Q |
218 |
acatgttgaaggttatgaaggaaaaaggagcagtgtatggaaactcaataatgaggcaagagcttagatcagaagcaagaaagtatattggtgacacagg |
317 |
Q |
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| T |
43012395 |
acatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagcttagatcagaagcaagaaagtatattggtgacacagg |
43012296 |
T |
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| Q |
318 |
tt |
319 |
Q |
| |
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|| |
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| T |
43012295 |
tt |
43012294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 18220820 - 18220518
Alignment:
| Q |
18 |
agccaaaactagggattgatagatgggctgctgagaggtaaatggttatttgtattcatagatgtaacctt-ttttcaatacacagttcagttttccact |
116 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||| ||||||||||||||||||||| |
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| T |
18220820 |
agccaaaaatatggattgatagatgggctgctgagaggtaaatggttatttgtatttaaagatgtaacctttttttcagtacacagttcagttttccact |
18220721 |
T |
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| Q |
117 |
tgctttgatatataggtgttagttagtttagttattaatttgatgttatatacttatatatgttaccttgtacatttgaaggtataagttagcagaggag |
216 |
Q |
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|| ||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18220720 |
tggtttaataggtgttagttagttagtttagttattaatttgatgttatatacttatatatgttatcttgtacatttgaaggtataagttagcagaggag |
18220621 |
T |
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| Q |
217 |
aacatgttgaaggttatgaaggaaaaaggagcagtgtatggaaactcaataatgaggcaagagcttagatcagaagcaagaaagtatattggtgacacag |
316 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
18220620 |
aacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagctgagatcagaagcacgaaagtatattggtgacacag |
18220521 |
T |
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| Q |
317 |
gtt |
319 |
Q |
| |
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||| |
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| T |
18220520 |
gtt |
18220518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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