View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13263_low_15 (Length: 312)
Name: NF13263_low_15
Description: NF13263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13263_low_15 |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 18912717 - 18912435
Alignment:
| Q |
19 |
aagaggctagactaaccaaggttcgatctcagttcggaaaggtattcacattttagtgtctgacgcagctcgaatagcattacctccagtagagtg-aac |
117 |
Q |
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| T |
18912717 |
aagaggctagactaaccaaggttcgatctcagttcggaaaggtattcacattttagtgtctgacgcacctcgaatagcattacctccagtagagtggaac |
18912618 |
T |
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| Q |
118 |
ctatctgaaactnnnnnnnn-cgagtcatcctattaccatgttttgtaagcataaaaaagcttttgcaaataattgtatatatttgatattattctttgt |
216 |
Q |
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| T |
18912617 |
ctatctgaaactaaaaaaaaacgagttatcctattaccatgttttgtaagcatgaaaaagcttttgcaaataattgtatatatttgatattattctttgt |
18912518 |
T |
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| Q |
217 |
taatctttgattaccacttcaaatatttccaaactagttttgaaagcgatgcttatttaatttttgtactttgtattgtagta |
299 |
Q |
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| T |
18912517 |
ttatctttgattaccacttcaaatatttccaaactagttttgaaagcaatgcttatttaatttttgtactttctattgtagta |
18912435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 18919878 - 18919804
Alignment:
| Q |
54 |
ggaaaggtattcacattttagtgtctgacgcagctcgaatagcattacctccagtagagtgaacctatctgaaac |
128 |
Q |
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| T |
18919878 |
ggaaaggtatccacattttagtgtctgacacacctcaaatatgattacctccagtagagggaacctatcggaaac |
18919804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 32577926 - 32577858
Alignment:
| Q |
44 |
atctcagttcggaaaggtattcacattttagtgtctgacgcagctcgaatagcattacctccagtagag |
112 |
Q |
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| T |
32577926 |
atctcagctaggaaaggtatccacattcaagtgtttgacgcacctcgaataggattacctccagtagag |
32577858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 12733807 - 12733758
Alignment:
| Q |
63 |
ttcacattttagtgtctgacgcagctcgaatagcattacctccagtagag |
112 |
Q |
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| T |
12733807 |
ttcacgttttagtgtttgacgcagctcgaatagaattactttcagtagag |
12733758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 8963 - 9012
Alignment:
| Q |
63 |
ttcacattttagtgtctgacgcagctcgaatagcattacctccagtagag |
112 |
Q |
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| T |
8963 |
ttcacgttttagtgtttgacgcagctcgaatagaattacttccaatagag |
9012 |
T |
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