View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13263_low_16 (Length: 304)
Name: NF13263_low_16
Description: NF13263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13263_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 12014504 - 12014781
Alignment:
| Q |
13 |
aaaataaaacaaatgtcagaataaacgcaaggaaatcaaggataatgatcaggaaagtgaaaattgaaacattaaagtaacctggatgtagcttgcagag |
112 |
Q |
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| T |
12014504 |
aaaataaaacaaatgtcagaataaatgcaaggaaatcaaggataatgatcaggaaagtgaaacttgaaacattaaagtaacctggatgtagcttgcagag |
12014603 |
T |
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| Q |
113 |
acactccttttaattcgaagcatttctctaaaggtgtcttcatttccacgttgaacctcaaattcacgccacttattccaaaagtcttgatcggacggtg |
212 |
Q |
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| T |
12014604 |
acactccttttaattcgaagcatttctctaaaggtgtcttcatttccacgttgaacctcaaattcacgccacttattccaaaagtcttgatcggaccgtg |
12014703 |
T |
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| Q |
213 |
gatcagcaaacttggaggcaaatacatatactccacgggaacgttcaatttctcctacgcttctttccagctcagcat |
290 |
Q |
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| T |
12014704 |
gatgagcaaacttggaggcaaatacatatactccacgggaacgttcaatttctcctacgcttctttccagctcagcat |
12014781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 46 - 290
Target Start/End: Complemental strand, 3031719 - 3031476
Alignment:
| Q |
46 |
aatcaaggataatgatcaggaaagtgaaaattgaaacattaaagtaacctggatgtagcttgcagagacactccttttaattcgaagcatttctctaaag |
145 |
Q |
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| T |
3031719 |
aatcaatgataaggctcaggaa-gtgaaaattgaaacattatagtaacctggctatagcttgcagagacactccttttaattcgaagcatttctctaaaa |
3031621 |
T |
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| Q |
146 |
gtgtcttcatttccacgttgaacctcaaattcacgccacttattccaaaagtcttgatcggacggtggatcagcaaacttggaggcaaatacatatactc |
245 |
Q |
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| T |
3031620 |
gtgtcctcatttccatgttgaacctcaaattcatgccaatcattccaaaagtctggatcagaccgcggatcagcaaacttggaggcaaatacatatactc |
3031521 |
T |
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| Q |
246 |
cacgggaacgttcaatttctcctacgcttctttccagctcagcat |
290 |
Q |
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|||||| ||||||||||||||| | |||||||||||| ||||||| |
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| T |
3031520 |
cacgggcacgttcaatttctcccaagcttctttccagttcagcat |
3031476 |
T |
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