View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13263_low_18 (Length: 265)
Name: NF13263_low_18
Description: NF13263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13263_low_18 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 29073892 - 29074124
Alignment:
| Q |
15 |
gagatgaattgacttgagtattcatgggcaggatgcaataattacctccaaaatccttgcaataattacattaatattatcattgaatttttatttattt |
114 |
Q |
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| T |
29073892 |
gagatgaatttacttgtgtattcatcggcaggatgcaataattacctccaaaatccttgcaataattacattaatattatcattgaatttttatttattt |
29073991 |
T |
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| Q |
115 |
cctggtcttgttgggtttattgtttttgtaagactttagtgttctattctactacgctttgtgttagataaaatactttctatgtgtgcggttccttcaa |
214 |
Q |
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| T |
29073992 |
cctggtcttgttcggtttattgtttttgtaagactttagtgttcttttctactacgctttgtgttatataaaatactttctatgtgtgcggttccttcaa |
29074091 |
T |
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| Q |
215 |
acagatgtgcgctgctggattcatgtgaaattg |
247 |
Q |
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| T |
29074092 |
acagatgtgcgctgctgcattcatgtgaaattg |
29074124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 29103404 - 29103505
Alignment:
| Q |
100 |
aatttttatttatttcctggtcttgttgggtttattgtttttgtaagactttagtgttctattctactacgctttgtgttagataaaatactttctatgt |
199 |
Q |
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| T |
29103404 |
aatttttatttatttccaaatcttgttcggtttgttgcttttgtaagactttagtgttctattctaatacgccttgcactaaatagaatactttctatgt |
29103503 |
T |
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| Q |
200 |
gt |
201 |
Q |
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| T |
29103504 |
gt |
29103505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 55789 - 55729
Alignment:
| Q |
129 |
gtttattgtttttgtaagactttagtgttctattctactacgctttgtgttagataaaata |
189 |
Q |
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| T |
55789 |
gtttgttgttttcgtaagactctagtgttttattctagtacgcactgtgttagatataata |
55729 |
T |
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