View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13263_low_2 (Length: 669)

Name: NF13263_low_2
Description: NF13263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13263_low_2
NF13263_low_2
[»] chr7 (1 HSPs)
chr7 (9-651)||(40254855-40255491)


Alignment Details
Target: chr7 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 9 - 651
Target Start/End: Original strand, 40254855 - 40255491
Alignment:
Q  9 gagatgaagcaagagatcaacttcaattgttaataagaaattttcagccatctacacaagctaagacatatagtactattccacaacttgatcatccaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254855 gagatgaagcaagagatcaacttcaattgttaataagaaattttcagccatctacacaagctaagacatatagtactattccacaacttgatcatccaaa 40254954  T
Q  109 gcaacaactttcatgtgatttatctttgtctagcctccaatcaaataatgagaagaaaatttcctcaatgaattcatctaacacaagaatagttgaatca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254955 gcaacaactttcatgtgatttatctttgtctagcctccaatcaaataatgagaagaaaatttcctcaatgaattcatctaacacaagaatagttgaatca 40255054  T
Q  209 tgcaacatggccttnnnnnnnnnnnnnnttcatcaaaacaaatttggaatagtaaatgcaaatattgatgatgttgcttcctctagcctttcacttcata 308  Q
    ||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40255055 tgcaacatggccttaaaaaagcaaaaaattcatcaaaacaaatttggaatagtaaatgcaaatattgatgatgttgcttcctctagcctttcacttcata 40255154  T
Q  309 gcatcaacaaggagaattatttatctaacaatatttatgataaggaaagtgttgttccaacttctttgagtttagcatttccttcgagttctaatggacc 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40255155 gcatcaacaaggagaattatttatctaacaatatttatgataaggaaagtgttgttccaacttctttgagtttagcatttccttcgagttctaatggacc 40255254  T
Q  409 ttctcatatgcgtcatggttctggttctggttctggtttattggtgaagaatgaaccaatgtcgtatatggaatcaaatgggatcaaaaatcatacaata 508  Q
    |||||||||||||||      | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40255255 ttctcatatgcgtca------tagttctggttctggtttattagtgaagaatgaaccaatgtcgtatatggaatcaaatgggatccaaaatcatacaata 40255348  T
Q  509 gcaggaaaaaagagaaagtttttataaggctgctcaaagnnnnnnnnatttgaattaaatgtgagatgaagatatatagccaactttatgtgtagattta 608  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40255349 gcaggaaaaaagagaaagtttttataaggctgctcaaagttttttttatttgaattaaatgtgagatgaagatatatagccaactttatgtgtagattta 40255448  T
Q  609 gcatctctaggttgcaattgcattgcctttttatattgtgtat 651  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  40255449 gcatctctaggttgcaattgcattgcctttttatattgtgtat 40255491  T

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