View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13263_low_3 (Length: 531)
Name: NF13263_low_3
Description: NF13263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13263_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 49 - 520
Target Start/End: Complemental strand, 54014146 - 54013680
Alignment:
| Q |
49 |
aataggacctatcctatattggaacctattctatactccttccaaactacatgtaaatattgtattggtgattaagcatgactttgtattggtgcagctg |
148 |
Q |
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| T |
54014146 |
aataggaccgatcctatattggaacctattctatactccttccaaactacatgtaaatattgtattggtgattaagcatgactttgtattggtgcagctg |
54014047 |
T |
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| Q |
149 |
gaaatgcaacatttttggaacatctaattttgatggcagtgattggaatacctatctttggggcttcaatgatgggatatggatccggaagtttggtata |
248 |
Q |
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| T |
54014046 |
gaaatgcaacatttttggaacatctaattttgatggcagtgattggaatacctatctttggggcttcaatgatgggatatggatccggaagtttggtata |
54013947 |
T |
|
| Q |
249 |
cggctatgttttgatttttgattttctaagatgcttgggtcattgcaacgttgaaataatcccacacaaattgttcaaggcatttccatttcttagatat |
348 |
Q |
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| T |
54013946 |
cggctatgttttgatttttgattttctaagatgcttgggtcattgcaacgttgaaataatcccacacaaattgttcaaggcatttccatttcttagatat |
54013847 |
T |
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| Q |
349 |
gtgatatacacaccaacgtaagtttattaaaatttacatttacatttgtccaaaatttagattacagttaatgcacccttgaggttgagtaacaaaacaa |
448 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54013846 |
gtgatacacacaccaacgtaagtttattaaaatttacatttacatttgtccaaaatttagattacagttaatgcacccttgaggttgagtaa-----caa |
54013752 |
T |
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| Q |
449 |
agtacgaatctctcttacttacactcattacttgttcaattgtcagacacataaaatagccccctcattcat |
520 |
Q |
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| T |
54013751 |
agtacgaatctctcttacttacactcattacttgttcaattgtcagacacataaaatagccccctcattcat |
54013680 |
T |
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