View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13263_low_4 (Length: 505)
Name: NF13263_low_4
Description: NF13263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13263_low_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 190 - 505
Target Start/End: Complemental strand, 171125 - 170810
Alignment:
| Q |
190 |
tatttgtgaagcagtgactatacaaccgaaagatgtatgaatgacttggttcgcaacatgttaatgtcttcaacaaatgatcgttgatctggttaggttt |
289 |
Q |
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| T |
171125 |
tatttgtgaagcagtgactatacaaccgaaagatgtatgaatgacttggttcgcaacatgttaatgtcttcaacaaatgatcgttgatctggttaggtct |
171026 |
T |
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| Q |
290 |
ggggtaaagatcgatgagaaagacaaggtaattattttgttatgctcgttcccaggtcttacctatgagaaagacactaccaacatcgatgtaattaatg |
389 |
Q |
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| T |
171025 |
ggggtaaagatcgatgagaaagacaaggtaattattttgttatgctcgttcccaggtcttacctatgagaaagacactaccaacatcgatgtaattaatg |
170926 |
T |
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| Q |
390 |
cttcattcttgtatcattctaaaggagaaaaaatttagaggaaagaactcaaggcgacgatttgtatatgaaagagagtcaagatcttaggcgaaacaaa |
489 |
Q |
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| T |
170925 |
cttcattcttgtatcattctaaaggagaaaaaatttagaggaaagaactcaaggcgacgatttgtatatgaaagagagtcaagatcttaggcgaaacaaa |
170826 |
T |
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| Q |
490 |
ggtaaagcatattgtg |
505 |
Q |
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| T |
170825 |
ggtaaagcatattgtg |
170810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 7 - 191
Target Start/End: Complemental strand, 171455 - 171271
Alignment:
| Q |
7 |
gtgagatgaaaccagccaacatagaggataccacttaagtagagatgataaagaaggtcacatgattgatatgtttatgtgtttcagacgaggtgatgta |
106 |
Q |
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| T |
171455 |
gtgagatgaaaccaaccaacatagaggataccgcttaagtagagatgataaagaaggtcacatgattgatatgtttatgtgtttcagacgaggtgatgta |
171356 |
T |
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| Q |
107 |
tcatattatggacctaacaactttgaaggaggtttgagataaattgaacagtcagtatatgaccaagacgctgataaagaaacta |
191 |
Q |
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| T |
171355 |
tcatattatggacctaacaactttgaaggaggtttgagataaattgaacagtcagtatatgaccaagacgctgataaataaacta |
171271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 10811577 - 10811500
Alignment:
| Q |
90 |
tcagacgaggtgatgtatcatattatggacctaacaactttgaaggaggtttgagataaattgaacagtcagtatatg |
167 |
Q |
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| T |
10811577 |
tcagaagaggttatgtatcataccatggacttgtcgaccttgaaggaggtttgagataaattgaagagttagtatatg |
10811500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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