View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13263_low_5 (Length: 498)
Name: NF13263_low_5
Description: NF13263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13263_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 13721972 - 13721575
Alignment:
| Q |
1 |
gtgtttggtttgaaactttatattattataatataaatgttt-----ttatcatgaattgaaaaagaagagtctgaaggaaacggccaggtttggacttt |
95 |
Q |
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| T |
13721972 |
gtgtttggtttgaaactttaaattattataatataaatgttactccattatcatgaattgaaaaagaagagtctgaaggaaacggccaggtttggacttt |
13721873 |
T |
|
| Q |
96 |
tgtgtatggcatgtcatgattggtaaatggaactggggtcatatctatttgcaatttctatggtaatacttataattcacttttgtcttctatagattaa |
195 |
Q |
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| T |
13721872 |
tgtgtatggcatgtcatgattggtaaatggaactggggtcatatctatttgcaatttctatggtaatacttataattcacttttgtcttctatagattaa |
13721773 |
T |
|
| Q |
196 |
aataaataagccgtgtgaaattactagcttcacaacgattcaatgattatcatttttgaactacttcactgcataaattgtacaatactgagaggactga |
295 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13721772 |
aataaataagccctgtgaaattactagcttcacaacgattcaatgattatcatttttgaactacttcactgcataaattgtacaatactgagaggactga |
13721673 |
T |
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| Q |
296 |
gtgaagtatgcactttctcaacaatggattcaattcagcaacgtataaaaagtatgtttttaacctttattcttcggcttataaaaaatagattacgcaa |
395 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
13721672 |
gtgaagtatgcactttctcaacaatggcttcaa-----caacgtataaaaagtatgtttttaacctttattcttcggcctatgaaaaatagattacgcaa |
13721578 |
T |
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