View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13263_low_6 (Length: 497)
Name: NF13263_low_6
Description: NF13263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13263_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 170346 - 170801
Alignment:
| Q |
1 |
ttggacactaatcaaatgagagttttaagtgatttgtcaatgaggtattcacaacctttgaattgctcatatcaactttctctagcacctttttaatgta |
100 |
Q |
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| T |
170346 |
ttggacactaatcaaatgagagttttaagtgatttgtcaatgaggtattcacaacctttgaattgctcatatcaactttctctagcacctttttaatgta |
170445 |
T |
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| Q |
101 |
gcttttatgagagagtcataattttctagcactcatatccttgaggtagtcgttttcgtgtagactacttacggaaatcaagttctttttcaattttgaa |
200 |
Q |
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| T |
170446 |
gcttttatgagagagtcataattttctagcactcatatccttgagatagtcgttttcgtgtagactacttacggaaatcaagttctttttcaattttgaa |
170545 |
T |
|
| Q |
201 |
atacctcacttgaatgtagtgaaccacttccattgcagcgtcatgtggtaagaacaaccaaagtcaagaatccacacataagcacacttgtcaggtgaaa |
300 |
Q |
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| T |
170546 |
atacctcacttgaatgtagtgaaccacttccagtgcggcgtcatgtggtaagaacaaccaaagtcaagaatccacacataagcacacttgccaggtgaaa |
170645 |
T |
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| Q |
301 |
cacaaataatatctccttcactgtcaaaatcatcggtttggaccacatttgcttaactggacggatcatattttttgctcggacaatacctctttcaatg |
400 |
Q |
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| T |
170646 |
cacaaataatatctccttcactgtcaaaatcatcggtttggaccacatttgcttaactggacgggtcatattttttgttcggacaatacctctttcaatg |
170745 |
T |
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| Q |
401 |
cttgatatgttaccaatcaaagcactaaattgttattctgttctttaattttgatc |
456 |
Q |
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| T |
170746 |
cttgatatgttaccaaccaaagcactaaattgttattttgttctttaattttgatc |
170801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 9837796 - 9837658
Alignment:
| Q |
5 |
acactaatcaaatgagagttttaagtgatttgtcaatgaggtattcacaacctttgaattgctcatatcaactttctctagcacctttttaatgtagctt |
104 |
Q |
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|||||||||||| |||| || || |||||||||||||| ||| || || ||| |||||||||| |||| ||| |||| ||||| || || |||||| |
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| T |
9837796 |
acactaatcaaacgagaacttaaaatgatttgtcaatgaagtactcgcagtcttcaaattgctcatgtcaaatttttctaacacctattcaacatagctt |
9837697 |
T |
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| Q |
105 |
ttatgagagagtcataattttctagcactcatatccttg |
143 |
Q |
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| T |
9837696 |
tttttagaaagccataactttctagcactcttgtccttg |
9837658 |
T |
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