View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13263_low_7 (Length: 446)
Name: NF13263_low_7
Description: NF13263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13263_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 28229943 - 28229782
Alignment:
| Q |
9 |
gagatgaataaagtaagttagtcagtaaaagcaaagtannnnnnnnn-gtgaagaaaataattcctctagattccggaaattgattttatcaagnnnnnn |
107 |
Q |
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| T |
28229943 |
gagatgaataaagtaagttagtcagtaaaagcaaagtatttttttattgtgaagaaaataattcctctagattccggaaattgattttatcaagaaataa |
28229844 |
T |
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| Q |
108 |
nngaagtaagtagtagtcctaaaattaaatgagtctaactagtatcaatttttaagacaagc |
169 |
Q |
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| T |
28229843 |
aagaagtaagtagtagtcctaaaattaaatgagtctaactagtatcaatttttaagacaagc |
28229782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 352 - 430
Target Start/End: Complemental strand, 28229599 - 28229522
Alignment:
| Q |
352 |
atttcttattgtttaagataataaattataatgattcaatttagcatgtggaatgagttaaagatcctctccatttaat |
430 |
Q |
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| T |
28229599 |
atttcttattgtttaagataataaattataatgattcaatttagcgtgtggaatgagtt-aagatcctctccatttaat |
28229522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 28229718 - 28229685
Alignment:
| Q |
233 |
catggtcatggcatatactccctccataatatgg |
266 |
Q |
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| T |
28229718 |
catggtcatggcatatactccctccataatatgg |
28229685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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