View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13263_low_8 (Length: 437)
Name: NF13263_low_8
Description: NF13263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13263_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 7 - 420
Target Start/End: Original strand, 33354353 - 33354764
Alignment:
| Q |
7 |
tacataattctatttaattatacaaatagccctataataacaatctccgattaactaactaacttctatataactactctgaactactttaactacaatt |
106 |
Q |
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| T |
33354353 |
tacattattctatttaattatacaaatagccctataataacaatctccgattaactaactaacttctata--actactctgaactactttaactacaatt |
33354450 |
T |
|
| Q |
107 |
gtccattattctaactcccaacacctttacaggaagaagttgtcataaaaacggagttgtttgagaagacgaaagtagaagctgagaagtgcttggctca |
206 |
Q |
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| T |
33354451 |
gtccattattctaactcccaacacctttacaggaagaagttgtcataaaaacggagttgtttgagaagacgaaagtagaagctgagaagtgcttggctca |
33354550 |
T |
|
| Q |
207 |
gagtgagagaatagccaatgagagggtggaatttgaatctcaaatctatactaaggtaacttttttactttcagattgtagttgttttctatttgtccat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33354551 |
gagtgagagaatagccaatgagagggtggaatttgaatctcaaatctatactaaggtaacttttttactttcacattgtagttgttttctatttgtccat |
33354650 |
T |
|
| Q |
307 |
tgaaaaatttgatctgtttgatttaacggcatagcatggttacaccctgtgtcacataagaaagcgaattgtcctactctcgatagattactgaagcaag |
406 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33354651 |
tgaaaattttgatctgtttgatttaacggcatagcatggttacaccctgtgtcacataagaaagcgaattatcctactctcgatagattactgaagcaag |
33354750 |
T |
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| Q |
407 |
taattgatcgaact |
420 |
Q |
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| T |
33354751 |
taattgatcgaact |
33354764 |
T |
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