View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13264_low_10 (Length: 226)
Name: NF13264_low_10
Description: NF13264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13264_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 5797539 - 5797727
Alignment:
| Q |
18 |
atctaaaaataagtatgacttttttagtacaccaaagtcttttgaattatgctaacaatgtattgttttcaacaaaattatgtggtatagcttttaataa |
117 |
Q |
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| T |
5797539 |
atctaaaaataagtatgacttttttagtacaccaaagtcttttgaattatgctaacaatgtattgttttcaacaaaattatgtggtatagtttttaataa |
5797638 |
T |
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| Q |
118 |
tatgttgtttcaacnnnnnnnnttgtggaagcagagttagagaaggaacatgataattaaaaaggaataataattactagagatgagaa |
206 |
Q |
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| T |
5797639 |
tatgttgtttcaacaaaaaaaaatgtggaagcagagttagagaaggaacatgataattaaaaaggaataataattactagagatgagaa |
5797727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 5778247 - 5778062
Alignment:
| Q |
18 |
atctaaaaataagtatgacttttttagtacaccaaagtcttttgaattatgctaacaatgtattgttttcaacaaaattatgtggtatagcttttaataa |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5778247 |
atctaaaaataagtatgactgttttagtacaccaaagtcttttgaattatgctaacaatgtattgttttcaacaaaattatgtggtatagcttttaataa |
5778148 |
T |
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| Q |
118 |
tatgttgtttcaacnnnnnnnnttgtggaagcagagttagagaaggaacatgataattaaaaaggaataataattactagagatgagaa |
206 |
Q |
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| T |
5778147 |
tttgttgtttcaa---aaaaaaatgtggaagcagagttagagaaggaacatgataattaaaaaggaataaaaattactagagatgagaa |
5778062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 5772613 - 5772428
Alignment:
| Q |
18 |
atctaaaaataagtatgacttttttagtacaccaaagtcttttgaattatgctaacaatgtattgttttcaacaaaattatgtggtatagcttttaat-- |
115 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5772613 |
atctaaaaataagtatgacttttttagtac-ccaaagtcttttgaattatgctaacaatgtgttgttttcaacaaaattatgtggtatagcttttaataa |
5772515 |
T |
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| Q |
116 |
-aatatgttgtttcaacnnnnnnnnttgtggaagcagagttagagaaggaacatgataattaaaaaggaataataattactagagatgagaa |
206 |
Q |
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| T |
5772514 |
taatatgttgtttaaa-----aaaaatgtgaaagcagagttagagaaggaacatgataattaaaaaagaataataattactagagatgagaa |
5772428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 5795844 - 5795782
Alignment:
| Q |
141 |
tgtggaagcagagttagagaaggaacatgataattaaaaaggaataataattactagagatgagaa |
206 |
Q |
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| T |
5795844 |
tgtggaagtaaagttagagaaggaacatgataattaaaaaggaa---taattactagagatgagaa |
5795782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 47118313 - 47118393
Alignment:
| Q |
37 |
ttttttagtacaccaaagtcttttgaattatgctaacaatgtattgttttcaacaaaattatgtggtatagcttttaataata |
119 |
Q |
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| T |
47118313 |
ttttttagt-caccaatgtcttttgaattatgttaacaatgtattg-tttcaacaaaattatgtagtgcagctttgaataata |
47118393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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