View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13264_low_2 (Length: 468)
Name: NF13264_low_2
Description: NF13264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13264_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 43 - 459
Target Start/End: Original strand, 30136328 - 30136744
Alignment:
| Q |
43 |
tagagaactctgacaagactttatttcatgctattaacattttggacagctaaaacaccaacttatcaaagtcaccgaggtaaatcattcttataactga |
142 |
Q |
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| T |
30136328 |
tagagaactctgacaagactttatttcatgctattaacattttggacagctaaaacaccaaattatcaaagtcaccgaggtaaatcattcttataactga |
30136427 |
T |
|
| Q |
143 |
aactatcactgtcgacgatgctcttatccttacccgaaatctgttctggatttatctatgggattagaatctggtgtttcagttaaggtcctagctgctg |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30136428 |
aactatcactgtcgacgatgctcttatccttacccgaaatctgttctggatttatctatgggattagaatctggtgtttcagttaaggtcctagctgctg |
30136527 |
T |
|
| Q |
243 |
gggattcattatctccgttttcggaagctgagctagcagcatcatccatctccttctctggacattcaatgtggagacactcagcaacttcattgttata |
342 |
Q |
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| T |
30136528 |
gggattcgttatctccgttttcggaagctgagctagcagcatcatccatctccttctctggacattcaatgtggagacactcagcaacttcattgttata |
30136627 |
T |
|
| Q |
343 |
actatcgtagtcatgacttcgacttgaagctgtaaagtcttctttcttgacaacactaaacacaattccattaagcattctttcgtgctgcaaaaaatca |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30136628 |
actatcgtagtcatgacttcgacttgaagctgtaaagtcttctttcttgacaacactaaacacaattccattaagcattctttcgtgctgcaaaaaatca |
30136727 |
T |
|
| Q |
443 |
ccttcagttagaattat |
459 |
Q |
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| T |
30136728 |
ccttcagttagaattat |
30136744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 99 - 452
Target Start/End: Complemental strand, 39133177 - 39132834
Alignment:
| Q |
99 |
accaacttatcaaagtcaccgaggtaaatcattcttataactgaaactatcactgtcgacgatgctcttatccttacccgaaatctgttctggatttatc |
198 |
Q |
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||||| |||| ||||||||||||||||| ||| |||| | ||||||||||||||| || ||||||||| |||||||| ||||| |||| ||| ||||| |
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| T |
39133177 |
accaaattattaaagtcaccgaggtaaagtatttttatcattgaaactatcactgtgaacaatgctcttacccttaccc-aaatccgttcaggaattatc |
39133079 |
T |
|
| Q |
199 |
tatgggattagaatctggtgtttcagttaaggtcctagctgctggggattcattatctccgttttcggaagctgagctagcagcatcatccatctccttc |
298 |
Q |
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| | |||||||| |||||||||||||||| || |||||||| || || || | |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39133078 |
tgtaggattagagtctggtgtttcagttaggggcctagctgttgcagaatcgtcatctccgttttctgaagctgagctagcagcatcatccatctccttc |
39132979 |
T |
|
| Q |
299 |
tctggacattcaatgtggagacactcagcaacttcattgttataactatcgtagtcatgacttcgacttgaagctgtaaagtcttctttcttgacaacac |
398 |
Q |
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||||||||||||| |||||||||||||||| ||| |||||| || |||||||| | |||||||| ||| ||||||||||||||||||||| |
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| T |
39132978 |
cctggacattcaatttggagacactcagcaatttc---------actatcataatcatgactcctacttgaaggtgttaagtcttctttcttgacaacat |
39132888 |
T |
|
| Q |
399 |
taaacacaattccattaagcattctttcgtgctgcaaaaaatcaccttcagtta |
452 |
Q |
| |
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||||||||||||||||| | ||||| || ||||||||| |||||||||||||| |
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|
| T |
39132887 |
taaacacaattccattatggattctctcaggctgcaaaagatcaccttcagtta |
39132834 |
T |
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