View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13264_low_4 (Length: 389)
Name: NF13264_low_4
Description: NF13264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13264_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 345796 - 346091
Alignment:
| Q |
1 |
cagagaaaggagagaaaggaggaaggagtggaagtgggttgtagtggtgcatcatctgaatttgattttgcatgaattttgaatctgttattattggtgt |
100 |
Q |
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| T |
345796 |
cagagaaaggagagaaaggaggaaggagtggaagtgggttgttgtggtgcatcatctgaatttgattttgcatgaattttgaatctgttattattggtgt |
345895 |
T |
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| Q |
101 |
tgcattttagtttgagactgggaattggtatgctatgtgaagttatgctgcagagagtgttgggaattgagcatgagttggtgcagtggaaggacatgtt |
200 |
Q |
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| T |
345896 |
tgcattttagtttgagactgggaattgatatgctatgtgaagttatggtgcagagagtgttgggaactgagcatgagttggtgcagtggaaggacatgtt |
345995 |
T |
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| Q |
201 |
ctctttttgtgggcgcacgcacacaagacacaacaaacaagtgtggatgtggcctat-----aggagggagatacttcatttcccacaagtctctt |
291 |
Q |
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| T |
345996 |
ctctttttgtgggcgcacgcacacaagacacaacaaacaagtgtggatgtggcctatgggtatggggggagatacttcatttcccacaagtctctt |
346091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 337 - 388
Target Start/End: Original strand, 346140 - 346191
Alignment:
| Q |
337 |
catttcacaaaaggttagttttggtaatttaaaatagagaaatgctaacacc |
388 |
Q |
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| T |
346140 |
catttcacaaaaggttagtttaggtaatttaaaatagtgaaatgctaacacc |
346191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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