View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13265_high_3 (Length: 539)

Name: NF13265_high_3
Description: NF13265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13265_high_3
NF13265_high_3
[»] chr5 (21 HSPs)
chr5 (253-522)||(1163633-1163902)
chr5 (9-225)||(1163930-1164146)
chr5 (9-225)||(1849620-1849836)
chr5 (9-213)||(3299149-3299353)
chr5 (9-213)||(3392042-3392246)
chr5 (323-522)||(1849904-1850106)
chr5 (323-465)||(3299472-3299617)
chr5 (323-465)||(3392365-3392510)
chr5 (14-214)||(38987356-38987556)
chr5 (324-476)||(40418223-40418375)
chr5 (14-208)||(40417946-40418140)
chr5 (323-475)||(39879753-39879905)
chr5 (323-476)||(38987644-38987797)
chr5 (323-475)||(39726357-39726509)
chr5 (60-214)||(39726115-39726269)
chr5 (60-214)||(39879517-39879671)
chr5 (326-475)||(39399801-39399950)
chr5 (323-462)||(39168785-39168924)
chr5 (60-206)||(39168603-39168749)
chr5 (60-191)||(39399601-39399735)
chr5 (48-214)||(40596325-40596485)
[»] chr4 (3 HSPs)
chr4 (9-198)||(25912538-25912727)
chr4 (330-465)||(25912295-25912430)
chr4 (397-462)||(44444772-44444837)


Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 253 - 522
Target Start/End: Complemental strand, 1163902 - 1163633
Alignment:
Q  253 aataaacagaagaagaagctggtttttaaggatgaacatgatgaagatggtgatgcttttgctacttatactgctgctgccaaaaaatatcgtttagcta 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163902 aataaacagaagaagaagctggtttttaaggatgaacatgatgaagatggtgatgcttttgctacttatactgctgctgccaaaaaatatcgtttagcta 1163803  T
Q  353 atgccatagttgctcgtgtcaaagatattggaaataataatcacacttttcaaatcaggactcatcttggtcgtattttaaaacccggtgaccatgctct 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163802 atgccatagttgctcgtgtcaaagatattggaaataataatcacacttttcaaatcaggactcatcttggtcgtattttaaaacccggtgaccatgctct 1163703  T
Q  453 tggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaatggt 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163702 tggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaatggt 1163633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 1164146 - 1163930
Alignment:
Q  9 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatcca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1164146 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatcca 1164047  T
Q  109 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1164046 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcg 1163947  T
Q  209 gtattgagaaattagat 225  Q
    |||||||||||||||||    
T  1163946 gtattgagaaattagat 1163930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 1849620 - 1849836
Alignment:
Q  9 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatcca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1849620 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatcca 1849719  T
Q  109 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcg 208  Q
    ||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  1849720 tttaccttgacccgctgtttcttaaaggctgatcgttactgggatgcacccttcacgccttcattctctaggcatcagttagtggaatatgttgttctcg 1849819  T
Q  209 gtattgagaaattagat 225  Q
    |||| ||||||||||||    
T  1849820 gtatcgagaaattagat 1849836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 3299149 - 3299353
Alignment:
Q  9 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatcca 108  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  3299149 gattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaatatttactttgcttgatcca 3299248  T
Q  109 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3299249 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgttgttctcg 3299348  T
Q  209 gtatt 213  Q
    |||||    
T  3299349 gtatt 3299353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 3392042 - 3392246
Alignment:
Q  9 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatcca 108  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  3392042 gattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaatatttactttgcttgatcca 3392141  T
Q  109 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3392142 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgttgttctcg 3392241  T
Q  209 gtatt 213  Q
    |||||    
T  3392242 gtatt 3392246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 323 - 522
Target Start/End: Original strand, 1849904 - 1850106
Alignment:
Q  323 ctgctgctgccaaaaaatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacac---ttttcaaatcaggactcatct 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||    
T  1849904 ctgctgctgccaaaaaatatcgtttagctaatgccatagttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaggactcatct 1850003  T
Q  420 tggtcgtattttaaaacccggtgaccatgctcttggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaat 519  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850004 tagtcgtattttaaaacctggtgaccatgctcttggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaat 1850103  T
Q  520 ggt 522  Q
    |||    
T  1850104 ggt 1850106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 323 - 465
Target Start/End: Original strand, 3299472 - 3299617
Alignment:
Q  323 ctgctgctgccaaaaaatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacac---ttttcaaatcaggactcatct 419  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||   ||||||||||| |||||||||    
T  3299472 ctgctgctgccaaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatct 3299571  T
Q  420 tggtcgtattttaaaacccggtgaccatgctcttggttatgacctg 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3299572 tggtcgtattttaaaacccggtgaccatgctcttggttatgacctg 3299617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 323 - 465
Target Start/End: Original strand, 3392365 - 3392510
Alignment:
Q  323 ctgctgctgccaaaaaatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacac---ttttcaaatcaggactcatct 419  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||   ||||||||||| |||||||||    
T  3392365 ctgctgctgccaaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatct 3392464  T
Q  420 tggtcgtattttaaaacccggtgaccatgctcttggttatgacctg 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3392465 tggtcgtattttaaaacccggtgaccatgctcttggttatgacctg 3392510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 38987356 - 38987556
Alignment:
Q  14 ttctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttac 113  Q
    ||||||||  |||| ||| ||||||||| ||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||    
T  38987356 ttctgcctcctaatgttgttgcttctttgggtccaaatattggtcctattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttac 38987455  T
Q  114 cttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcggtatt 213  Q
    ||||||||||||||||||| | |||  ||| |||||| | ||||| ||||| | |||||||  |||| |||||||||| ||||||| |||||||| ||||    
T  38987456 cttgacccactgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaataggactcagttagtcgaatatgttgttctcgatatt 38987555  T
Q  214 g 214  Q
    |    
T  38987556 g 38987556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 324 - 476
Target Start/End: Original strand, 40418223 - 40418375
Alignment:
Q  324 tgctgctgccaaaaaatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttgg 422  Q
    ||||||||||||||||||| |||||||| ||||  | ||||||||||| |||||||||||||||||| | |||| |||||||||||||||||||||||||    
T  40418223 tgctgctgccaaaaaatattgtttagctgatgctgtggttgctcgtgtgaaagatattggaaataatga-cacaacttttcaaatcaggactcatcttgg 40418321  T
Q  423 tcgtattttaaaacccggtgaccatgctcttggttatgacctgcctgaaggaga 476  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  40418322 tcgtattttaaaacccggtgaccatgctcttggttatgacctgtctggaggaga 40418375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 40417946 - 40418140
Alignment:
Q  14 ttctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttac 113  Q
    ||||||||  |||| ||| ||||||||| |||  |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  40417946 ttctgcctcctaatgttgttgcttctttcggtgaaaatattggtcctattgtcatttgcactagggttgccaaaacatttactttgcttgatccatttac 40418045  T
Q  114 cttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcg 208  Q
    ||||||||||||||||||| | |||  ||| |||||| | ||||| ||||| | |||||||  |||| |||||||||| ||||||| ||||||||    
T  40418046 cttgacccactgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaataggactcagttagtcgaatatgttgttctcg 40418140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 323 - 475
Target Start/End: Original strand, 39879753 - 39879905
Alignment:
Q  323 ctgctgctgccaaaaaatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttg 421  Q
    ||||||| ||||||||||||||||||||| ||||  | ||||||||||| ||||||| |||||||||| | |||| ||||||||||||||||||||||||    
T  39879753 ctgctgccgccaaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga-cacaacttttcaaatcaggactcatcttg 39879851  T
Q  422 gtcgtattttaaaacccggtgaccatgctcttggttatgacctgcctgaaggag 475  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  39879852 gtcgtattttaaaacccggtgaccatgctcttggttatgacctgtctggaggag 39879905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 323 - 476
Target Start/End: Original strand, 38987644 - 38987797
Alignment:
Q  323 ctgctgctgccaaaaaatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttg 421  Q
    ||||||| ||||||||||||||||||||| ||||  | ||||||||||| ||||||| |||||||||| | |||| |||||||||||||||||||||| |    
T  38987644 ctgctgccgccaaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga-cacaacttttcaaatcaggactcatctcg 38987742  T
Q  422 gtcgtattttaaaacccggtgaccatgctcttggttatgacctgcctgaaggaga 476  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  38987743 gtcgtatcttaaaacccggtgaccatgctcttggttatgacctgtctggaggaga 38987797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 323 - 475
Target Start/End: Original strand, 39726357 - 39726509
Alignment:
Q  323 ctgctgctgccaaaaaatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttg 421  Q
    ||||||| ||||||||||||||||||||| ||||  | ||||||||||| ||||||| |||||||||| | |||| |||||||||||||||||||||| |    
T  39726357 ctgctgccgccaaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga-cacaacttttcaaatcaggactcatctcg 39726455  T
Q  422 gtcgtattttaaaacccggtgaccatgctcttggttatgacctgcctgaaggag 475  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||| |||||    
T  39726456 gtcgtatcttaaaacccggtgaccatgctcttggttatgacctgtctggaggag 39726509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 60 - 214
Target Start/End: Original strand, 39726115 - 39726269
Alignment:
Q  60 tattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcaccc 159  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||  ||| |||||| | |||||     
T  39726115 tattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacca 39726214  T
Q  160 ttcacgccttcattctctaggcctcagttagtggaatatgctgttctcggtattg 214  Q
    ||||| | |||||||  |||| |||||||||| ||||||| |||||||| |||||    
T  39726215 ttcacacattcattcaataggactcagttagtcgaatatgttgttctcgatattg 39726269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 60 - 214
Target Start/End: Original strand, 39879517 - 39879671
Alignment:
Q  60 tattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcaccc 159  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||  ||| |||||| | |||||     
T  39879517 tattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacca 39879616  T
Q  160 ttcacgccttcattctctaggcctcagttagtggaatatgctgttctcggtattg 214  Q
    ||||| | |||||||  |||| |||||||||| ||||||| |||||||| |||||    
T  39879617 ttcacacattcattcaataggactcagttagtcgaatatgttgttctcgatattg 39879671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 326 - 475
Target Start/End: Original strand, 39399801 - 39399950
Alignment:
Q  326 ctgctgccaaaaaatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtc 424  Q
    ||||||| |||||||| ||||||||| ||||| | |||||||||||  || || ||||||||||| | |||| |||||||||||||||||||||||||||    
T  39399801 ctgctgctaaaaaataccgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataatga-cacaacttttcaaatcaggactcatcttggtc 39399899  T
Q  425 gtattttaaaacccggtgaccatgctcttggttatgacctgcctgaaggag 475  Q
     |||||||||| |||||||| ||||||||||||||||| || ||| |||||    
T  39399900 atattttaaaatccggtgactatgctcttggttatgacttgtctggaggag 39399950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 323 - 462
Target Start/End: Original strand, 39168785 - 39168924
Alignment:
Q  323 ctgctgctgccaaaaaatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttg 421  Q
    |||||||||||||||||||||| |||||| ||||| | |||||||||||  ||||| ||||||||||| | |||| ||||||||||||  |||||||| |    
T  39168785 ctgctgctgccaaaaaatatcggttagctgatgccgtggttgctcgtgtggaagattttggaaataatga-cacaacttttcaaatcaaaactcatctag 39168883  T
Q  422 gtcgtattttaaaacccggtgaccatgctcttggttatgac 462  Q
    ||| |||||||||| |||||||| |||||||||||||||||    
T  39168884 gtcatattttaaaatccggtgactatgctcttggttatgac 39168924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 60 - 206
Target Start/End: Original strand, 39168603 - 39168749
Alignment:
Q  60 tattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcaccc 159  Q
    ||||||||| || |||||||||||||||| | ||||||| ||||||||||||||||||||    | || ||||||||||| | | |||||| ||||||||    
T  39168603 tattgttatatgcactagggttgccaaaaaaattactttacttgatccatttaccttgactgctttttccttaaaggctgatgagtactggaatgcaccc 39168702  T
Q  160 ttcacgccttcattctctaggcctcagttagtggaatatgctgttct 206  Q
    ||||||| ||||||| ||||| ||||||||||| |||||| ||||||    
T  39168703 ttcacgcattcattcactaggactcagttagtgaaatatgttgttct 39168749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 60 - 191
Target Start/End: Original strand, 39399601 - 39399735
Alignment:
Q  60 tattgttatttgtactagggttgccaaaacatttact---ttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgca 156  Q
    |||||| || || |||||||||||||||| | |||||   ||||||||||||||||||||||||   | || ||||||||||| ||| |||||| |||||    
T  39399601 tattgtcatatgcactagggttgccaaaaaaattactactttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgca 39399700  T
Q  157 cccttcacgccttcattctctaggcctcagttagt 191  Q
    || ||||||| |||||||  |||| ||||||||||    
T  39399701 cctttcacgcattcattcaataggactcagttagt 39399735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 214
Target Start/End: Original strand, 40596325 - 40596485
Alignment:
Q  48 aaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatac 147  Q
    ||||||| |||||||| | |||||||    |||||| |||| | ||||||||||||||   || |||||||   ||||| ||||||| | || ||| |||    
T  40596325 aaatattagtcctattatcatttgta----ggttgctaaaagaattactttgcttgatt--ttcaccttgaggtactgtatcttaaatgttgatcagtac 40596418  T
Q  148 tgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcggtattg 214  Q
    ||| ||||||  |||||||||||| || |||||  |||||||||||||||| |||| |||| |||||    
T  40596419 tggaatgcacttttcacgccttcactcactaggagtcagttagtggaatattctgtgctcgatattg 40596485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 25912727 - 25912538
Alignment:
Q  9 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatcca 108  Q
    |||| ||||||||  |||| |||||||||||||  ||  |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||    
T  25912727 gatttttctgcctcctaatgttgctgcttctttcagtgtaaatattggtcctattgtcatttgcactagggttgccaaaacatttactttacttgatcca 25912628  T
Q  109 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatat 198  Q
    ||||||||||| || |||||||| ||||||| ||| |||||| |||||||||||||||||| |||| |||||||||||||||| ||||||    
T  25912627 tttaccttgactcattgtttcttgaaggctgatcagtactggaatgcacccttcacgccttaattcactaggcctcagttagttgaatat 25912538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 330 - 465
Target Start/End: Complemental strand, 25912430 - 25912295
Alignment:
Q  330 tgccaaaaaatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtat 428  Q
    |||||||||||||||||||||| |||   | ||||||||||| |||||||||||||||||| | |||| |||||||||||||||||||||||||||||||    
T  25912430 tgccaaaaaatatcgtttagctgatgatgtggttgctcgtgtgaaagatattggaaataatga-cacaacttttcaaatcaggactcatcttggtcgtat 25912332  T
Q  429 tttaaaacccggtgaccatgctcttggttatgacctg 465  Q
    | ||||||||| |||||||||||||||||||||||||    
T  25912331 tctaaaacccgatgaccatgctcttggttatgacctg 25912295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 397 - 462
Target Start/End: Complemental strand, 44444837 - 44444772
Alignment:
Q  397 acttttcaaatcaggactcatcttggtcgtattttaaaacccggtgaccatgctcttggttatgac 462  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  44444837 acttttcaaatcaagactcatcttggtcgtattttaaaacctggtgactatgctcttggttatgac 44444772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University