View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13265_high_6 (Length: 453)
Name: NF13265_high_6
Description: NF13265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13265_high_6 |
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| [»] scaffold0224 (3 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 168 - 336
Target Start/End: Original strand, 12614 - 12791
Alignment:
| Q |
168 |
tcttttctcgtatttcaacttcaattcttttcacttcaactagttcaattctcattctctcnnnnnnnn---------ctagttcaattctcatggaaga |
258 |
Q |
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| T |
12614 |
tcttttctagtatttcaacttcaattcttttcacttcaactagttcaattctcattctctaaaaaaaaaaaaaaaaaactagttcaattctcatggaaga |
12713 |
T |
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| Q |
259 |
taccctaaacaataggctgctcaaacaatatttttcactgttgggtaattgcattttgagagaggctataaacaagga |
336 |
Q |
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| T |
12714 |
taccctaaacaataggctgctcaaacaatatttttcactgttgggtgattgcattttgagagaggctataaacaagga |
12791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 351 - 444
Target Start/End: Original strand, 12822 - 12915
Alignment:
| Q |
351 |
ttgggtttctctaataaacatttatgtaagttgtagcaatcacacttatgtgcgctagatatttgatgaaatacctcaacaagatattgtctct |
444 |
Q |
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| T |
12822 |
ttgggtttctctaataaacatttatgtaagttgtagcaatcacacttatgtgcgctggatatttgatgaaatacctcaacaagatattgtctct |
12915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 11842 - 11900
Alignment:
| Q |
18 |
aagtgcagtgtctagagttatttgggaatatccaagttgaaaaagccatttttaatcct |
76 |
Q |
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| T |
11842 |
aagtgcagtgtctagagttatttgagaatatccaagttgaaaaggccatttttaatcct |
11900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 168 - 336
Target Start/End: Complemental strand, 42934157 - 42933980
Alignment:
| Q |
168 |
tcttttctcgtatttcaacttcaattcttttcacttcaactagttcaattctcattctctcnnnnnnnn---------ctagttcaattctcatggaaga |
258 |
Q |
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| T |
42934157 |
tcttttctagtatttcaacttcaattcttttcacttcaactagttcaattctcattctctaaaaaaaaaaaaaaaaaactagttcaattctcatggaaga |
42934058 |
T |
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| Q |
259 |
taccctaaacaataggctgctcaaacaatatttttcactgttgggtaattgcattttgagagaggctataaacaagga |
336 |
Q |
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| T |
42934057 |
taccctaaacaataggctgctcaaacaatatttttcactgttgggtgattgcattttgagagaggctataaacaagga |
42933980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 351 - 444
Target Start/End: Complemental strand, 42933949 - 42933856
Alignment:
| Q |
351 |
ttgggtttctctaataaacatttatgtaagttgtagcaatcacacttatgtgcgctagatatttgatgaaatacctcaacaagatattgtctct |
444 |
Q |
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| T |
42933949 |
ttgggtttctctaataaacatttatgtaagttgtagcaatcacacttatgtgcgctggatatttgatgaaatacctcaacaagatattgtctct |
42933856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 42934929 - 42934871
Alignment:
| Q |
18 |
aagtgcagtgtctagagttatttgggaatatccaagttgaaaaagccatttttaatcct |
76 |
Q |
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| T |
42934929 |
aagtgcagtgtctagagttatttgagaatatccaagttgaaaaggccatttttaatcct |
42934871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 21263196 - 21263254
Alignment:
| Q |
18 |
aagtgcagtgtctagagttatttgggaatatccaagttgaaaaagccatttttaatcct |
76 |
Q |
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| T |
21263196 |
aagtgcagtgtctagagttatttgggaatatccaagttgaaaaagccatttttaatcct |
21263254 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 1718049 - 1718001
Alignment:
| Q |
28 |
tctagagttatttgggaatatccaagttgaaaaagccatttttaatcct |
76 |
Q |
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|||| |||||||||||||| |||||||| ||||| |||||||||||||| |
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| T |
1718049 |
tctaaagttatttgggaatctccaagttaaaaaaaccatttttaatcct |
1718001 |
T |
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