View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13265_low_10 (Length: 379)
Name: NF13265_low_10
Description: NF13265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13265_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 40763818 - 40763450
Alignment:
| Q |
1 |
cactgaacagagttgtcacttgaaacatttcaccagcaccctcacaatcacttgtcgtgacaattggcgtgcgcacataaagaaacccatgcttgttgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40763818 |
cactgaacagagttgtcacttgaaacatttcaccagcaccctcacaatcacttgtcgtgacaattggcgtgcgcacataaagaaacccatgcttgttgaa |
40763719 |
T |
|
| Q |
101 |
aaatgtatgtgtagcataagcaagagcattcccaatccgagcaacagcagatatctgcattcacaccacccaataataacatgcataaaatgtactagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40763718 |
aaatgtatgtgtagcataagcaagagcattcccaatccgagcaacagcagatatctgcattcacaccacccaataataacatgcataaaatgtactagct |
40763619 |
T |
|
| Q |
201 |
tcagaagcataaatcaattagtctatttggattgatcaatttagtttttgaatttgtctctaagggacacgtgagacagggaagtatgaattttagagat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40763618 |
tcagaagcataaatcaattagtctatttggattgatcaatttagtttttgaatttgtctctaagggacacgtgagacagggaagtatgaactttagagat |
40763519 |
T |
|
| Q |
301 |
catttctaaattttgttaattttaaggatgtaattgtttgactctacattttcaaaaacgaaattgatg |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40763518 |
catttctaaattttgttaattttaaggatgtaattgtttgactctacattttcaaaaacgaaattgatg |
40763450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 42911546 - 42911328
Alignment:
| Q |
1 |
cactgaacagagttgtcacttgaaacatttcaccagcaccctcacaatcacttgtcgtgacaattggcgtgcgcacataaagaaacccatgcttgttgaa |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42911546 |
cactgaacaaagttgtcacttgaaacatttcaccagcaccctcacaatcactagtcgtgacaattggcgtgtgcacataaagaaacccatgcttgttgaa |
42911447 |
T |
|
| Q |
101 |
aaatgtatgtgtagcataagcaagagcattcccaatccgagcaacagcagatatctgcattcacaccacccaataataacatgcataaaatgtactagct |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||| ||||||| |
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| T |
42911446 |
aaatgtatgtgtagcataagcaagagcattccgaatccgagcaacagcagatatctgcattcatatcacccaatagtaacatgcataaaattcactagct |
42911347 |
T |
|
| Q |
201 |
tcagaagcataaatcaatt |
219 |
Q |
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||||||||||||||||||| |
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| T |
42911346 |
tcagaagcataaatcaatt |
42911328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 217 - 369
Target Start/End: Complemental strand, 42910974 - 42910831
Alignment:
| Q |
217 |
attagtctatttggattgatcaatttagtttttgaatttgtctctaagggacacgtgagacagggaagtatgaattttagagatcatttctaaattttgt |
316 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||||||| ||||||||| |
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| T |
42910974 |
attaatctatttggattgatcaatttagtttttgaaattgtcttgaaggaacatatgagacagggaagt--------tagagatcatttcaaaattttgt |
42910883 |
T |
|
| Q |
317 |
taattttaaggatgtaattgtttgactctacattttcaaaaacgaaattgatg |
369 |
Q |
| |
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|||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
42910882 |
taattt-aaggatggaattgtttaactctacattttcaaaaacgaaattgatg |
42910831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 28615785 - 28615743
Alignment:
| Q |
217 |
attagtctatttggattgatcaatttagtttttgaatttgtct |
259 |
Q |
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|||||||| ||| ||||||||||||||||||||||| |||||| |
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| T |
28615785 |
attagtctctttagattgatcaatttagtttttgaaattgtct |
28615743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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